Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.26□□□□□ -1.73
COL4A3Q01955 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC4.26□□□□□ -1.73
COL4A3Q01955 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.26□□□□□ -1.73
COL4A3Q01955 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 Y_RNA.128-201ENST00000363391 112 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 RNU6-744P-201ENST00000365557 107 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 RNU6-1316P-201ENST00000384242 108 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 HSPE1P12-201ENST00000412576 301 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC119618.1-201ENST00000434191 222 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC4.26□□□□□ -1.73
COL4A3Q01955 RPS20P32-201ENST00000456044 356 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 Y_RNA.632-201ENST00000459189 102 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.26□□□□□ -1.73
COL4A3Q01955 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC112206.3-201ENST00000514578 389 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC026403.1-201ENST00000518938 295 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 OR4R1P-201ENST00000529879 463 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.26□□□□□ -1.73
COL4A3Q01955 OR5B19P-201ENST00000531766 928 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC006064.5-201ENST00000541782 248 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AL352979.3-201ENST00000553515 247 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC020661.2-201ENST00000560114 134 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC004853.1-201ENST00000604902 698 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 HSPE1P14-201ENST00000605812 302 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 AC008121.3-201ENST00000618726 433 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 AC134503.1-201ENST00000633048 54 ntBASIC4.26□□□□□ -1.73
COL4A3Q01955 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.26□□□□□ -1.73
COL4A3Q01955 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
COL4A3Q01955 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
COL4A3Q01955 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.25□□□□□ -1.73
COL4A3Q01955 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
COL4A3Q01955 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
COL4A3Q01955 Y_RNA.422-201ENST00000384054 114 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 MIR1-2-201ENST00000384961 85 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 SNORA75.4-201ENST00000391278 119 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AL590704.1-201ENST00000402856 794 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.25□□□□□ -1.73
COL4A3Q01955 AC236972.1-201ENST00000433225 199 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC024082.2-201ENST00000434771 238 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 RPL23AP74-201ENST00000437246 471 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 BRK1P2-201ENST00000442875 223 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A3Q01955 PPIAP15-201ENST00000479662 484 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 RPS29P19-201ENST00000479709 171 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 PCBP2P3-201ENST00000509726 843 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A3Q01955 RN7SKP46-201ENST00000515942 234 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 SNORA40.12-201ENST00000516329 111 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC107934.1-201ENST00000522215 217 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 PSMA2P1-201ENST00000526365 646 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AP003072.2-201ENST00000527756 676 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC087241.2-201ENST00000535801 324 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A3Q01955 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.25□□□□□ -1.73
COL4A3Q01955 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A3Q01955 LARP7P2-201ENST00000575306 125 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.25□□□□□ -1.73
COL4A3Q01955 AC115085.1-201ENST00000588924 229 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC006504.6-201ENST00000590142 199 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 C2orf27A-204ENST00000623058 969 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 FP236240.3-201ENST00000623061 327 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 MTND5P42-201ENST00000637720 498 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
COL4A3Q01955 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.25□□□□□ -1.73
COL4A3Q01955 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
COL4A3Q01955 AC090229.1-201ENST00000590983 1609 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC092125.1-201ENST00000562568 1995 ntBASIC4.25□□□□□ -1.73
COL4A3Q01955 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.25□□□□□ -1.73
COL4A3Q01955 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 MTCO1P9-201ENST00000505577 1534 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A3Q01955 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms