Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FAM60CP-201ENST00000591086 664 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 DEFB131E-202ENST00000602581 683 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AC084373.1-201ENST00000603311 235 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AC121247.2-201ENST00000604776 136 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AL021997.1-201ENST00000605757 193 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AC103591.3-201ENST00000608684 209 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AL360219.1-201ENST00000610230 366 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.83□□□□□ -1.96
COL4A4P53420 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.83□□□□□ -1.96
COL4A4P53420 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.83□□□□□ -1.96
COL4A4P53420 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
COL4A4P53420 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
COL4A4P53420 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC2.83□□□□□ -1.96
COL4A4P53420 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL4A4P53420 SUCLA2P2-201ENST00000417269 1309 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 ZNF542P-204ENST00000482727 1305 ntBASIC2.83□□□□□ -1.96
COL4A4P53420 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.83□□□□□ -1.96
COL4A4P53420 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
COL4A4P53420 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC010733.2-201ENST00000589496 5702 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A4P53420 RNVU1-3-201ENST00000364313 161 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AL590290.1-201ENST00000405336 380 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 NANOGP2-201ENST00000435391 727 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AL008629.1-201ENST00000438615 184 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC009961.3-201ENST00000449832 765 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 OR6K1P-201ENST00000456766 971 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A4P53420 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A4P53420 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 OR5BM1P-201ENST00000512021 366 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 MRPS33P3-201ENST00000513456 322 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.82□□□□□ -1.96
COL4A4P53420 SEC11B-201ENST00000518383 499 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC2.82□□□□□ -1.96
COL4A4P53420 AP001207.1-201ENST00000524051 481 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AP003461.1-201ENST00000528866 78 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC025918.2-201ENST00000558683 763 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC068135.2-201ENST00000569293 1028 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 MIR4648-201ENST00000580107 72 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 MIR3605-201ENST00000583214 100 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AP003465.2-201ENST00000602571 373 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC010680.4-201ENST00000605334 543 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 VIS1.1-201ENST00000610517 203 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC092106.3-201ENST00000611308 722 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC092794.1-201ENST00000612734 582 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC015540.1-201ENST00000615828 501 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC079228.1-201ENST00000624774 1049 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 FRG1DP-201ENST00000635586 771 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
COL4A4P53420 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A4P53420 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A4P53420 AC005832.2-201ENST00000538921 1430 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL4A4P53420 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 Y_RNA.77-201ENST00000362962 107 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 RNU6-1242P-201ENST00000391052 103 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AL136310.1-201ENST00000404926 654 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 RAP1BP3-201ENST00000407180 549 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 MTND4P20-201ENST00000424125 869 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 FCF1P1-201ENST00000432690 571 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC009969.1-201ENST00000438726 172 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC118469.1-201ENST00000442943 488 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 ST13P20-201ENST00000447996 1065 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 ANKRD26P4-201ENST00000455755 950 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 RN7SL283P-201ENST00000489055 303 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.82□□□□□ -1.96
COL4A4P53420 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC105185.1-201ENST00000518705 535 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC007115.1-201ENST00000546853 234 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 CYB5AP5-201ENST00000549779 389 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AL389895.1-201ENST00000554127 252 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC122133.1-201ENST00000613964 233 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 AC131159.1-201ENST00000621854 213 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC092608.2-201ENST00000624427 218 ntBASIC2.82□□□□□ -1.96
COL4A4P53420 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.82□□□□□ -1.96
COL4A4P53420 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
COL4A4P53420 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC2.81□□□□□ -1.96
COL4A4P53420 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
COL4A4P53420 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL4A4P53420 RNU6-207P-201ENST00000384137 107 ntBASIC2.81□□□□□ -1.96
COL4A4P53420 SNORD116-12-201ENST00000384468 92 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms