Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.88□□□□□ -1.95
CUX1P39880 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC2.88□□□□□ -1.95
CUX1P39880 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.88□□□□□ -1.95
CUX1P39880 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CUX1P39880 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.88□□□□□ -1.95
CUX1P39880 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
CUX1P39880 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
CUX1P39880 AC000367.1-201ENST00000452711 1766 ntBASIC2.88□□□□□ -1.95
CUX1P39880 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.88□□□□□ -1.95
CUX1P39880 RNU6-392P-201ENST00000364926 101 ntBASIC2.88□□□□□ -1.95
CUX1P39880 RNU1-57P-201ENST00000384491 166 ntBASIC2.88□□□□□ -1.95
CUX1P39880 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.88□□□□□ -1.95
CUX1P39880 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC2.88□□□□□ -1.95
CUX1P39880 AC010265.1-201ENST00000513509 211 ntBASIC2.88□□□□□ -1.95
CUX1P39880 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.88□□□□□ -1.95
CUX1P39880 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.88□□□□□ -1.95
CUX1P39880 AC034268.2-201ENST00000571784 482 ntBASIC2.88□□□□□ -1.95
CUX1P39880 AC103987.3-201ENST00000582071 292 ntBASIC2.88□□□□□ -1.95
CUX1P39880 MIR6504-201ENST00000613520 61 ntBASIC2.88□□□□□ -1.95
CUX1P39880 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
CUX1P39880 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
CUX1P39880 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
CUX1P39880 USP9YP27-201ENST00000418455 438 ntBASIC2.87□□□□□ -1.95
CUX1P39880 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.87□□□□□ -1.95
CUX1P39880 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC2.87□□□□□ -1.95
CUX1P39880 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC2.87□□□□□ -1.95
CUX1P39880 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.87□□□□□ -1.95
CUX1P39880 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.87□□□□□ -1.95
CUX1P39880 MIR449C-201ENST00000516047 92 ntBASIC2.87□□□□□ -1.95
CUX1P39880 SNORA31.15-201ENST00000516771 132 ntBASIC2.87□□□□□ -1.95
CUX1P39880 CD24P2-201ENST00000565486 219 ntBASIC2.87□□□□□ -1.95
CUX1P39880 AC005951.1-201ENST00000576706 485 ntBASIC2.87□□□□□ -1.95
CUX1P39880 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.86□□□□□ -1.95
CUX1P39880 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.86□□□□□ -1.95
CUX1P39880 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.86□□□□□ -1.95
CUX1P39880 MIR613-201ENST00000385248 95 ntBASIC2.86□□□□□ -1.95
CUX1P39880 AC004965.1-201ENST00000413033 213 ntBASIC2.86□□□□□ -1.95
CUX1P39880 HMGB1P27-201ENST00000431429 603 ntBASIC2.86□□□□□ -1.95
CUX1P39880 AC009238.1-201ENST00000442165 424 ntBASIC2.86□□□□□ -1.95
CUX1P39880 AC009237.6-201ENST00000446969 424 ntBASIC2.86□□□□□ -1.95
CUX1P39880 TVP23BP2-201ENST00000455082 615 ntBASIC2.86□□□□□ -1.95
CUX1P39880 RN7SKP40-201ENST00000517211 242 ntBASIC2.86□□□□□ -1.95
CUX1P39880 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC2.86□□□□□ -1.95
CUX1P39880 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.86□□□□□ -1.95
CUX1P39880 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.86□□□□□ -1.95
CUX1P39880 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.86□□□□□ -1.95
CUX1P39880 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.86□□□□□ -1.95
CUX1P39880 RLIMP2-201ENST00000427891 1563 ntBASIC2.86□□□□□ -1.95
CUX1P39880 SEPT7P7-201ENST00000420492 1301 ntBASIC2.86□□□□□ -1.95
CUX1P39880 RNU4-13P-201ENST00000364019 141 ntBASIC2.85□□□□□ -1.95
CUX1P39880 Z98749.2-208ENST00000381646 500 ntBASIC2.85□□□□□ -1.95
CUX1P39880 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CUX1P39880 RPL19P1-201ENST00000411635 428 ntBASIC2.85□□□□□ -1.95
CUX1P39880 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.85□□□□□ -1.95
CUX1P39880 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.85□□□□□ -1.95
CUX1P39880 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.85□□□□□ -1.95
CUX1P39880 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC2.85□□□□□ -1.95
CUX1P39880 AC083899.3-201ENST00000603413 594 ntBASIC2.85□□□□□ -1.95
CUX1P39880 MIR502-201ENST00000606349 86 ntBASIC2.85□□□□□ -1.95
CUX1P39880 AC012360.2-201ENST00000609349 391 ntBASIC2.85□□□□□ -1.95
CUX1P39880 AP000553.5-201ENST00000641933 54 ntBASIC2.85□□□□□ -1.95
CUX1P39880 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CUX1P39880 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
CUX1P39880 SNORA16.1-201ENST00000364597 132 ntBASIC2.84□□□□□ -1.95
CUX1P39880 RNU6-707P-201ENST00000364647 95 ntBASIC2.84□□□□□ -1.95
CUX1P39880 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CUX1P39880 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.84□□□□□ -1.95
CUX1P39880 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC2.84□□□□□ -1.95
CUX1P39880 DUXAP3-201ENST00000603616 594 ntBASIC2.84□□□□□ -1.95
CUX1P39880 BX248123.2-201ENST00000606318 124 ntBASIC2.84□□□□□ -1.95
CUX1P39880 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CUX1P39880 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.96
CUX1P39880 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
CUX1P39880 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
CUX1P39880 RNU2-68P-201ENST00000410878 191 ntBASIC2.83□□□□□ -1.96
CUX1P39880 RSL24D1P2-201ENST00000445584 366 ntBASIC2.83□□□□□ -1.96
CUX1P39880 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.83□□□□□ -1.96
CUX1P39880 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.83□□□□□ -1.96
CUX1P39880 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.83□□□□□ -1.96
CUX1P39880 SNORA31.26-201ENST00000517250 137 ntBASIC2.83□□□□□ -1.96
CUX1P39880 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC2.83□□□□□ -1.96
CUX1P39880 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.83□□□□□ -1.96
CUX1P39880 HPVC1-201ENST00000629899 1198 ntBASIC2.83□□□□□ -1.96
CUX1P39880 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CUX1P39880 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
CUX1P39880 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.83□□□□□ -1.96
CUX1P39880 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CUX1P39880 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CUX1P39880 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.83□□□□□ -1.96
CUX1P39880 AL121972.1-201ENST00000402023 252 ntBASIC2.83□□□□□ -1.96
CUX1P39880 RNU4-74P-201ENST00000411280 161 ntBASIC2.83□□□□□ -1.96
CUX1P39880 AC239798.3-201ENST00000454459 408 ntBASIC2.83□□□□□ -1.96
CUX1P39880 ARL4AP2-201ENST00000507378 601 ntBASIC2.83□□□□□ -1.96
CUX1P39880 RNU6-964P-201ENST00000516524 69 ntBASIC2.83□□□□□ -1.96
CUX1P39880 AP000790.1-201ENST00000528891 737 ntBASIC2.83□□□□□ -1.96
CUX1P39880 RPL23AP78-201ENST00000599928 470 ntBASIC2.83□□□□□ -1.96
CUX1P39880 DCAF13P1-201ENST00000495256 1330 ntBASIC2.82□□□□□ -1.96
CUX1P39880 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
CUX1P39880 AC240504.1-201ENST00000395709 845 ntBASIC2.82□□□□□ -1.96
CUX1P39880 AC092638.1-201ENST00000411966 1275 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms