Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MIR1294-201ENST00000408503 142 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AL513331.1-201ENST00000411908 397 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AC073310.1-201ENST00000423226 1033 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.38□□□□□ -2.03
COL5A3P25940 SETP8-201ENST00000435341 628 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 CR769767.1-201ENST00000436337 346 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 RPL23AP16-201ENST00000441715 421 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.38□□□□□ -2.03
COL5A3P25940 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC2.38□□□□□ -2.03
COL5A3P25940 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.38□□□□□ -2.03
COL5A3P25940 RNU6-362P-201ENST00000516736 90 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC2.38□□□□□ -2.03
COL5A3P25940 MIR5089-201ENST00000580047 84 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AL356575.1-201ENST00000603008 283 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AC117490.2-201ENST00000610042 594 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.38□□□□□ -2.03
COL5A3P25940 AC010329.2-201ENST00000595195 2737 ntBASIC2.38□□□□□ -2.03
COL5A3P25940 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
COL5A3P25940 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
COL5A3P25940 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
COL5A3P25940 MIR499A-201ENST00000384903 122 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 AL034374.1-201ENST00000406329 351 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
COL5A3P25940 TRIM60P18-201ENST00000441518 828 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 RPL23AP76-201ENST00000441860 458 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 SNRPGP9-201ENST00000456025 225 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 AC055855.1-201ENST00000489563 579 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 RNU2-58P-201ENST00000516403 183 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 RNU6-250P-201ENST00000516958 103 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 SNORA31.26-201ENST00000517250 137 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.37□□□□□ -2.03
COL5A3P25940 IGHVIII-38-1-201ENST00000521454 282 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 HMGB1P1-201ENST00000522557 636 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.37□□□□□ -2.03
COL5A3P25940 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.37□□□□□ -2.03
COL5A3P25940 AL356280.1-201ENST00000603614 379 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 AC011468.4-201ENST00000603942 409 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 AC092159.4-201ENST00000624944 550 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.37□□□□□ -2.03
COL5A3P25940 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
COL5A3P25940 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
COL5A3P25940 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
COL5A3P25940 AP1B1P2-201ENST00000416196 106 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.37□□□□□ -2.03
COL5A3P25940 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.37□□□□□ -2.03
COL5A3P25940 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.37□□□□□ -2.03
COL5A3P25940 GTF2IP9-201ENST00000502460 301 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
COL5A3P25940 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.37□□□□□ -2.03
COL5A3P25940 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC2.37□□□□□ -2.03
COL5A3P25940 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.37□□□□□ -2.03
COL5A3P25940 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.37□□□□□ -2.03
COL5A3P25940 AP000787.2-201ENST00000604432 568 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 AC020658.4-201ENST00000613987 684 ntBASIC2.37□□□□□ -2.03
COL5A3P25940 AL512283.1-201ENST00000606756 1384 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL5A3P25940 AL353746.1-201ENST00000566293 6881 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 RNU6-386P-201ENST00000362650 107 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 RNU6-532P-201ENST00000384318 107 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 MT-TP-201ENST00000387461 68 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 SNORA67.5-201ENST00000391036 107 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 SNORD65-201ENST00000391079 73 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 U3.37-201ENST00000408528 213 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 AF274854.1-201ENST00000413236 615 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC2.36□□□□□ -2.03
COL5A3P25940 ZNF92P1Y-201ENST00000415010 1191 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 MTCO3P21-201ENST00000430791 643 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 MTCO1P57-201ENST00000432182 261 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 TAF9P1-201ENST00000445421 515 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 RPL39P40-201ENST00000445481 146 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 TAF9P2-201ENST00000454958 515 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 HNRNPDLP3-201ENST00000456745 380 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 MTND4LP22-201ENST00000508209 276 ntBASIC2.36□□□□□ -2.03
COL5A3P25940 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.36□□□□□ -2.03
COL5A3P25940 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.36□□□□□ -2.03
COL5A3P25940 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC2.36□□□□□ -2.03
COL5A3P25940 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.36□□□□□ -2.03
COL5A3P25940 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.36□□□□□ -2.03
COL5A3P25940 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
COL5A3P25940 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
COL5A3P25940 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL5A3P25940 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL5A3P25940 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
COL5A3P25940 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
COL5A3P25940 AL021407.1-201ENST00000404531 386 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 HMGN2P35-201ENST00000412164 270 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 MTATP6P19-201ENST00000413797 659 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 TRGV6-201ENST00000417928 299 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.35□□□□□ -2.03
COL5A3P25940 AC244453.4-201ENST00000419150 388 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 AL138785.1-201ENST00000425821 331 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.35□□□□□ -2.03
COL5A3P25940 RPL31P20-201ENST00000449593 360 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.35□□□□□ -2.03
COL5A3P25940 CALM1P2-201ENST00000452941 448 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 MTND3P4-201ENST00000453537 303 ntBASIC2.35□□□□□ -2.03
COL5A3P25940 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.35□□□□□ -2.03
COL5A3P25940 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.35□□□□□ -2.03
COL5A3P25940 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms