Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
HOXD4P09016 AL133383.2-201ENST00000622958 2336 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HOXD4P09016 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HOXD4P09016 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 SNORA7.2-201ENST00000364446 145 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 CUBN-201ENST00000377823 705 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD4P09016 RNU6-1122P-201ENST00000384449 107 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 MIR649-201ENST00000384843 97 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD4P09016 AC096664.2-201ENST00000411843 406 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 HSFY4P-201ENST00000415994 1181 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD4P09016 OFD1P18Y-201ENST00000420889 959 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AC244098.2-201ENST00000422068 99 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 BX119904.4-201ENST00000424402 301 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD4P09016 RPL23AP69-201ENST00000431134 458 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD4P09016 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD4P09016 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD4P09016 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD4P09016 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD4P09016 RPL23AP35-201ENST00000451906 501 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD4P09016 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD4P09016 AC108078.3-201ENST00000502633 489 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 MTCYBP37-201ENST00000510642 1133 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 RNU6-583P-201ENST00000516012 92 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AC068657.1-201ENST00000520807 306 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AC092470.1-201ENST00000546187 132 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 OR7K1P-201ENST00000546439 926 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.19□□□□□ -1.9
HOXD4P09016 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD4P09016 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD4P09016 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.19□□□□□ -1.9
HOXD4P09016 AC012435.1-202ENST00000568772 240 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AC006077.1-201ENST00000604746 343 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AC068722.2-201ENST00000618734 544 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AL031667.3-201ENST00000620124 655 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.19□□□□□ -1.9
HOXD4P09016 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 ZNF734P-201ENST00000419494 1534 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 FER-202ENST00000438717 1531 ntTSL 2 BASIC3.19□□□□□ -1.9
HOXD4P09016 MAPK10-362ENST00000641864 4484 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
HOXD4P09016 AC011477.1-204ENST00000623416 1325 ntBASIC3.19□□□□□ -1.9
HOXD4P09016 AL353746.1-201ENST00000566293 6881 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD4P09016 RNU6-500P-201ENST00000362349 107 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 Y_RNA.18-201ENST00000362461 102 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 SNRPEP2-201ENST00000397592 279 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AL031577.2-201ENST00000404133 280 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 RNU6-920P-201ENST00000410926 92 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 NDUFB4P5-201ENST00000415445 361 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 MTCYBP38-201ENST00000417160 1123 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 SEPT2P1-201ENST00000419651 180 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD4P09016 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 AL590103.1-201ENST00000434488 307 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 RPL23AP22-201ENST00000437556 453 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 NPM1P49-201ENST00000448027 714 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 RPL26P28-201ENST00000451325 435 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 MTCO3P11-201ENST00000455103 774 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 MTCO3P2-201ENST00000457365 171 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AC092754.2-201ENST00000463506 460 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 RPS4XP10-201ENST00000465034 731 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AC092451.1-201ENST00000480211 153 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 RPL31P13-201ENST00000484151 370 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD4P09016 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
HOXD4P09016 AC008489.1-201ENST00000524271 483 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 OR5AP1P-201ENST00000529730 940 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 OR4A45P-201ENST00000529954 901 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HOXD4P09016 AC007954.1-201ENST00000554198 494 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 ZNF192P1-203ENST00000565888 810 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD4P09016 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.18□□□□□ -1.9
HOXD4P09016 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC3.18□□□□□ -1.9
HOXD4P09016 WISP1-OT1-201ENST00000602893 642 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AC006557.5-201ENST00000603126 811 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AL590229.1-201ENST00000603497 542 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 HMGN2P28-201ENST00000606102 262 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AC024560.3-201ENST00000608482 349 ntBASIC3.18□□□□□ -1.9
HOXD4P09016 AC107294.3-201ENST00000609211 526 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms