Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.1□□□□□ -2.23
APOBP04114 MIR3199-2-201ENST00000636243 86 ntBASIC1.1□□□□□ -2.23
APOBP04114 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.1□□□□□ -2.23
APOBP04114 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
APOBP04114 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC1.1□□□□□ -2.23
APOBP04114 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.1□□□□□ -2.23
APOBP04114 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC1.1□□□□□ -2.23
APOBP04114 AC093331.1-201ENST00000521474 169 ntBASIC1.1□□□□□ -2.23
APOBP04114 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC1.1□□□□□ -2.23
APOBP04114 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.1□□□□□ -2.23
APOBP04114 AL356280.1-201ENST00000603614 379 ntBASIC1.1□□□□□ -2.23
APOBP04114 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.1□□□□□ -2.23
APOBP04114 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC1.1□□□□□ -2.23
APOBP04114 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
APOBP04114 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
APOBP04114 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.1□□□□□ -2.23
APOBP04114 RPS15AP17-201ENST00000470598 390 ntBASIC1.1□□□□□ -2.23
APOBP04114 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.1□□□□□ -2.23
APOBP04114 AC015720.1-201ENST00000565251 277 ntBASIC1.1□□□□□ -2.23
APOBP04114 AC012531.5-201ENST00000611375 151 ntBASIC1.1□□□□□ -2.23
APOBP04114 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.1□□□□□ -2.23
APOBP04114 AP000553.5-201ENST00000641933 54 ntBASIC1.1□□□□□ -2.23
APOBP04114 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
APOBP04114 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC1.09□□□□□ -2.23
APOBP04114 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.23
APOBP04114 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
APOBP04114 USP9YP27-201ENST00000418455 438 ntBASIC1.09□□□□□ -2.23
APOBP04114 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.09□□□□□ -2.23
APOBP04114 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.09□□□□□ -2.23
APOBP04114 USP9YP10-201ENST00000454868 628 ntBASIC1.09□□□□□ -2.23
APOBP04114 AC006483.1-201ENST00000487308 313 ntBASIC1.09□□□□□ -2.23
APOBP04114 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC1.09□□□□□ -2.23
APOBP04114 APOOP1-201ENST00000604695 592 ntBASIC1.09□□□□□ -2.23
APOBP04114 MTCO1P4-201ENST00000520516 1409 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-1-201ENST00000383898 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-42P-201ENST00000384165 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-36P-201ENST00000384172 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-4P-201ENST00000384205 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-5P-201ENST00000384238 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-3P-201ENST00000384314 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-2-201ENST00000384627 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-9-201ENST00000384776 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-33P-201ENST00000384793 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 AL023807.1-201ENST00000407932 359 ntBASIC1.09□□□□□ -2.23
APOBP04114 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.09□□□□□ -2.23
APOBP04114 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.09□□□□□ -2.23
APOBP04114 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.09□□□□□ -2.23
APOBP04114 RPS29P29-201ENST00000456396 171 ntBASIC1.09□□□□□ -2.23
APOBP04114 HMGN1P7-201ENST00000491722 313 ntBASIC1.09□□□□□ -2.23
APOBP04114 GTF2IP9-201ENST00000502460 301 ntBASIC1.09□□□□□ -2.23
APOBP04114 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.09□□□□□ -2.23
APOBP04114 AL731537.2-201ENST00000561565 951 ntBASIC1.09□□□□□ -2.23
APOBP04114 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC1.09□□□□□ -2.23
APOBP04114 AC080078.3-201ENST00000605407 463 ntBASIC1.09□□□□□ -2.23
APOBP04114 RNU6-6P-201ENST00000606623 107 ntBASIC1.09□□□□□ -2.23
APOBP04114 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.09□□□□□ -2.23
APOBP04114 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC1.09□□□□□ -2.24
APOBP04114 MTND4P23-201ENST00000447723 1363 ntBASIC1.09□□□□□ -2.24
APOBP04114 LSM5-205ENST00000409952 687 ntTSL 4 BASIC1.09□□□□□ -2.24
APOBP04114 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.09□□□□□ -2.24
APOBP04114 COX6CP12-201ENST00000446748 202 ntBASIC1.09□□□□□ -2.24
APOBP04114 SPINK13-202ENST00000511106 661 ntAPPRIS ALT2 TSL 1 (best) BASIC1.09□□□□□ -2.24
APOBP04114 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.09□□□□□ -2.24
APOBP04114 PTP4A1P6-201ENST00000531034 478 ntBASIC1.09□□□□□ -2.24
APOBP04114 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.09□□□□□ -2.24
APOBP04114 AP003499.2-201ENST00000624100 483 ntBASIC1.09□□□□□ -2.24
APOBP04114 AC138649.5-201ENST00000637456 137 ntBASIC1.09□□□□□ -2.24
APOBP04114 BX649567.1-201ENST00000642071 1134 ntBASIC1.09□□□□□ -2.24
APOBP04114 AC005336.3-201ENST00000623833 2679 ntBASIC1.09□□□□□ -2.24
APOBP04114 MTND5P3-201ENST00000438536 1800 ntBASIC1.08□□□□□ -2.24
APOBP04114 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.08□□□□□ -2.24
APOBP04114 AC091544.1-201ENST00000484702 348 ntBASIC1.08□□□□□ -2.24
APOBP04114 RNU2-58P-201ENST00000516403 183 ntBASIC1.08□□□□□ -2.24
APOBP04114 5S_rRNA.12-201ENST00000617631 107 ntBASIC1.08□□□□□ -2.24
APOBP04114 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.08□□□□□ -2.24
APOBP04114 AC110774.1-201ENST00000623567 2018 ntBASIC1.08□□□□□ -2.24
APOBP04114 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
APOBP04114 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
APOBP04114 RNU6-60P-201ENST00000364792 103 ntBASIC1.08□□□□□ -2.24
APOBP04114 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
APOBP04114 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC1.08□□□□□ -2.24
APOBP04114 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.08□□□□□ -2.24
APOBP04114 RPS3AP23-202ENST00000574601 686 ntBASIC1.08□□□□□ -2.24
APOBP04114 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.08□□□□□ -2.24
APOBP04114 OR10AB1P-201ENST00000609613 938 ntBASIC1.08□□□□□ -2.24
APOBP04114 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
APOBP04114 AL121594.5-201ENST00000631724 573 ntBASIC1.08□□□□□ -2.24
APOBP04114 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC1.08□□□□□ -2.24
APOBP04114 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.08□□□□□ -2.24
APOBP04114 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
APOBP04114 RNA5SP160-201ENST00000364866 120 ntBASIC1.08□□□□□ -2.24
APOBP04114 TAS2R15P-201ENST00000390674 928 ntBASIC1.08□□□□□ -2.24
APOBP04114 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.08□□□□□ -2.24
APOBP04114 AC244505.5-201ENST00000443639 207 ntBASIC1.08□□□□□ -2.24
APOBP04114 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.08□□□□□ -2.24
APOBP04114 SNORA25.15-201ENST00000516487 89 ntBASIC1.08□□□□□ -2.24
APOBP04114 VN1R79P-201ENST00000593540 513 ntBASIC1.08□□□□□ -2.24
APOBP04114 AC019159.1-201ENST00000605094 187 ntBASIC1.08□□□□□ -2.24
APOBP04114 MIR6515-201ENST00000619843 57 ntBASIC1.08□□□□□ -2.24
APOBP04114 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms