Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC092159.4-201ENST00000624944 550 ntBASIC2.94□□□□□ -1.94
CCDC88BA6NC98 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.94□□□□□ -1.94
CCDC88BA6NC98 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.94□□□□□ -1.94
CCDC88BA6NC98 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.94□□□□□ -1.94
CCDC88BA6NC98 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC88BA6NC98 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.93□□□□□ -1.94
CCDC88BA6NC98 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CCDC88BA6NC98 VTRNA1-1-201ENST00000363120 99 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 MIR591-201ENST00000385290 95 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 MIR1323-201ENST00000408090 73 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.93□□□□□ -1.94
CCDC88BA6NC98 BX322784.1-201ENST00000455793 1077 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 SNRPGP9-201ENST00000456025 225 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 RNU1-40P-201ENST00000516816 164 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 RNU1-97P-201ENST00000516872 164 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 AP003385.6-201ENST00000531603 374 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 MIR4419B-201ENST00000577260 68 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 KATNBL1P1-201ENST00000605192 748 ntBASIC2.93□□□□□ -1.94
CCDC88BA6NC98 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.93□□□□□ -1.94
CCDC88BA6NC98 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC88BA6NC98 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC88BA6NC98 U3.15-201ENST00000365398 212 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 MIR518E-201ENST00000385252 88 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AL121972.1-201ENST00000402023 252 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 RPL17P12-201ENST00000413391 526 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AC099336.2-201ENST00000422457 254 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AC092451.1-201ENST00000480211 153 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AC104581.2-201ENST00000572227 430 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AC116447.1-201ENST00000613153 453 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 AC090897.3-201ENST00000636973 1157 ntBASIC2.92□□□□□ -1.94
CCDC88BA6NC98 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC88BA6NC98 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 RNA5SP167-201ENST00000365461 116 ntBASIC2.91□□□□□ -1.94
CCDC88BA6NC98 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 AC124916.1-201ENST00000444020 547 ntBASIC2.91□□□□□ -1.94
CCDC88BA6NC98 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 ARL2BPP2-201ENST00000550907 489 ntBASIC2.91□□□□□ -1.94
CCDC88BA6NC98 AC103987.3-201ENST00000582071 292 ntBASIC2.91□□□□□ -1.94
CCDC88BA6NC98 AL589994.2-201ENST00000621124 579 ntBASIC2.91□□□□□ -1.94
CCDC88BA6NC98 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC88BA6NC98 Y_RNA.116-201ENST00000363292 103 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 RNU4-13P-201ENST00000364019 141 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 RNU4-74P-201ENST00000411280 161 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 AC114973.1-201ENST00000429057 632 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 RAB9AP5-201ENST00000437794 597 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 RAB9AP2-201ENST00000443911 597 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.9□□□□□ -1.94
CCDC88BA6NC98 AC011753.1-201ENST00000451001 220 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.9□□□□□ -1.94
CCDC88BA6NC98 RNU6-964P-201ENST00000516524 69 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 PTP4A1P6-201ENST00000531034 478 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 AC007375.1-201ENST00000554513 578 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 AL590099.1-201ENST00000615276 138 ntBASIC2.9□□□□□ -1.94
CCDC88BA6NC98 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.9□□□□□ -1.94
CCDC88BA6NC98 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC88BA6NC98 SNORD48-201ENST00000364953 64 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 Y_RNA.355-201ENST00000365462 98 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 MIR489-201ENST00000384923 84 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 TAF9P1-201ENST00000445421 515 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 TAF9P2-201ENST00000454958 515 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.9□□□□□ -1.95
CCDC88BA6NC98 AC069528.1-202ENST00000482888 637 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 AC012170.1-201ENST00000495139 359 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 AC124283.4-201ENST00000581815 456 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 AC110774.1-201ENST00000623567 2018 ntBASIC2.9□□□□□ -1.95
CCDC88BA6NC98 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.89□□□□□ -1.95
CCDC88BA6NC98 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC88BA6NC98 SNORA25.9-201ENST00000365087 128 ntBASIC2.89□□□□□ -1.95
CCDC88BA6NC98 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC88BA6NC98 MTND2P16-201ENST00000419987 799 ntBASIC2.89□□□□□ -1.95
CCDC88BA6NC98 AC092473.1-201ENST00000441098 221 ntBASIC2.89□□□□□ -1.95
CCDC88BA6NC98 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.89□□□□□ -1.95
CCDC88BA6NC98 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.89□□□□□ -1.95
CCDC88BA6NC98 RNU6-392P-201ENST00000364926 101 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 RNU1-57P-201ENST00000384491 166 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 HMGB3P2-201ENST00000411913 584 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AC006483.1-201ENST00000487308 313 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AC090255.1-201ENST00000495779 349 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC88BA6NC98 MTND4LP22-201ENST00000508209 276 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AC109471.1-201ENST00000511631 612 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.88□□□□□ -1.95
CCDC88BA6NC98 MTND4P23-201ENST00000447723 1363 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 AC004520.1-201ENST00000608362 1413 ntBASIC2.88□□□□□ -1.95
CCDC88BA6NC98 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC88BA6NC98 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
CCDC88BA6NC98 RNU2-37P-201ENST00000410695 177 ntBASIC2.87□□□□□ -1.95
CCDC88BA6NC98 AC004965.1-201ENST00000413033 213 ntBASIC2.87□□□□□ -1.95
CCDC88BA6NC98 NDUFA5P4-201ENST00000436704 385 ntBASIC2.87□□□□□ -1.95
CCDC88BA6NC98 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.87□□□□□ -1.95
CCDC88BA6NC98 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms