Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC034105.3-201ENST00000565294 442 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 ELOCP29-201ENST00000588193 334 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC034229.4-201ENST00000607861 441 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC068722.2-201ENST00000618734 544 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC107982.1-201ENST00000507171 1300 ntBASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
TRAV40A0A0B4J280 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 MTND5P7-201ENST00000413558 1798 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC096644.4-201ENST00000563417 2912 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 SNORD82-201ENST00000365530 70 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 RNU6-83P-201ENST00000384568 112 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 DHFRP6-201ENST00000401776 268 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 MTND4LP20-201ENST00000402379 270 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 ELOCP9-201ENST00000418624 239 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 OR2AS1P-201ENST00000427827 319 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 RPL21P40-201ENST00000428586 483 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 USP9YP22-201ENST00000438971 294 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 RPL23AP16-201ENST00000441715 421 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 MTCO1P48-201ENST00000448024 1096 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AP000873.1-201ENST00000463987 400 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 RPL9P32-201ENST00000464118 620 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC010301.1-201ENST00000473936 355 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 RNF138P1-201ENST00000502765 546 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 OR5H5P-201ENST00000503164 928 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 BOLA3P3-201ENST00000505182 232 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 HMGB1P28-201ENST00000507778 552 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC104986.1-201ENST00000517978 436 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 MRPS36P3-201ENST00000519284 130 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 MTND1P24-201ENST00000552175 861 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC107954.1-201ENST00000565906 727 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 MIR4319-201ENST00000577285 85 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 MAGOH2P-202ENST00000584384 429 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC113368.1-201ENST00000603736 382 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 ATP1B3P1-201ENST00000605365 821 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AL139418.1-201ENST00000613613 177 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC009318.4-201ENST00000620496 486 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC091046.2-201ENST00000620775 665 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC040168.1-201ENST00000623594 991 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 OR1S1-201ENST00000624470 978 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC009039.2-201ENST00000624524 529 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC084035.1-201ENST00000634543 607 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 U6.101-201ENST00000637707 76 ntBASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.03
TRAV40A0A0B4J280 AC025125.1-201ENST00000624743 1922 ntBASIC2.34□□□□□ -2.04
TRAV40A0A0B4J280 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.04
TRAV40A0A0B4J280 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.34□□□□□ -2.04
TRAV40A0A0B4J280 AL136964.1-201ENST00000622038 2990 ntBASIC2.34□□□□□ -2.04
TRAV40A0A0B4J280 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.34□□□□□ -2.04
TRAV40A0A0B4J280 AC099786.3-201ENST00000565735 1410 ntBASIC2.34□□□□□ -2.04
TRAV40A0A0B4J280 ZNF876P-202ENST00000398732 1485 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 PABPC1P7-201ENST00000413177 1513 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 Y_RNA.548-201ENST00000384656 105 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 MT-TC-201ENST00000387405 66 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 UBE2V1P2-201ENST00000397758 440 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 U3.42-201ENST00000408746 214 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 RNA5SP56-201ENST00000410277 118 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 RNA5SP344-201ENST00000411081 104 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AL592148.1-201ENST00000413568 445 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 RPL31P2-201ENST00000413849 377 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AC092447.6-201ENST00000414578 210 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AC092832.1-201ENST00000422934 400 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AC093151.1-201ENST00000427711 313 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 CR769776.1-201ENST00000441254 787 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 AC005297.2-201ENST00000450430 606 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 SLC31A1P1-201ENST00000451221 567 ntBASIC2.33□□□□□ -2.04
TRAV40A0A0B4J280 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms