Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
PRKDCP78527 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC13.89□□□□□ -0.19
PRKDCP78527 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.88□□□□□ -0.19
PRKDCP78527 AL160286.2-201ENST00000567150 934 ntBASIC13.88□□□□□ -0.19
PRKDCP78527 AC005332.3-201ENST00000589904 676 ntBASIC13.88□□□□□ -0.19
PRKDCP78527 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC13.88□□□□□ -0.19
PRKDCP78527 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 LITAF-220ENST00000620789 692 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 YBX2P1-201ENST00000394192 760 ntBASIC13.88□□□□□ -0.19
PRKDCP78527 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.88□□□□□ -0.19
PRKDCP78527 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 GAD2-202ENST00000376248 680 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC13.88□□□□□ -0.19
PRKDCP78527 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
PRKDCP78527 AC116407.3-201ENST00000623905 1129 ntBASIC13.88□□□□□ -0.19
PRKDCP78527 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
PRKDCP78527 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
PRKDCP78527 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC13.87□□□□□ -0.19
PRKDCP78527 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC13.87□□□□□ -0.19
PRKDCP78527 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC13.87□□□□□ -0.19
PRKDCP78527 PNKD-204ENST00000436005 978 ntTSL 5 BASIC13.87□□□□□ -0.19
PRKDCP78527 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.87□□□□□ -0.19
PRKDCP78527 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC13.87□□□□□ -0.19
PRKDCP78527 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 AC233702.3-201ENST00000578656 1387 ntBASIC13.87□□□□□ -0.19
PRKDCP78527 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC13.87□□□□□ -0.19
PRKDCP78527 METTL21AP1-201ENST00000438852 635 ntBASIC13.87□□□□□ -0.19
PRKDCP78527 AF186996.4-201ENST00000467186 377 ntBASIC13.87□□□□□ -0.19
PRKDCP78527 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC13.87□□□□□ -0.19
PRKDCP78527 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC13.87□□□□□ -0.19
PRKDCP78527 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC13.87□□□□□ -0.19
PRKDCP78527 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
PRKDCP78527 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC13.87□□□□□ -0.19
PRKDCP78527 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC13.86□□□□□ -0.19
PRKDCP78527 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.86□□□□□ -0.19
PRKDCP78527 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.86□□□□□ -0.19
PRKDCP78527 BNIP3P18-201ENST00000593976 575 ntBASIC13.86□□□□□ -0.19
PRKDCP78527 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
PRKDCP78527 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC13.86□□□□□ -0.19
PRKDCP78527 SPCS2P1-201ENST00000561636 679 ntBASIC13.86□□□□□ -0.19
PRKDCP78527 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 AL136038.4-201ENST00000603606 1261 ntBASIC13.86□□□□□ -0.19
PRKDCP78527 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PRKDCP78527 MIR3917-201ENST00000580971 93 ntBASIC13.86□□□□□ -0.19
PRKDCP78527 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
PRKDCP78527 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
PRKDCP78527 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
PRKDCP78527 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PRKDCP78527 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
PRKDCP78527 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms