Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RPS11P7-201ENST00000442125 465 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RNU6-953P-201ENST00000459154 107 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AC087385.1-201ENST00000475062 312 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AC108860.1-201ENST00000484521 383 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AC012123.2-201ENST00000485809 248 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AC092436.3-201ENST00000511788 257 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 Y_RNA.680-201ENST00000516441 93 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 Y_RNA.689-201ENST00000516589 107 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 MIR5188-201ENST00000583467 113 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 OR7E18P-201ENST00000592589 702 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 EOGT-210ENST00000615922 1931 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 ADAM24P-201ENST00000398655 2101 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 RNU6-1059P-201ENST00000363752 98 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 RNU6-817P-201ENST00000391083 104 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AL354766.1-201ENST00000423396 542 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 NEFMP1-201ENST00000443423 1006 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 MTCO3P8-201ENST00000453691 755 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC091180.1-201ENST00000462104 372 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 RN7SL799P-201ENST00000475891 298 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 RN7SL214P-201ENST00000487317 265 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC072052.1-201ENST00000496556 306 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC083829.1-201ENST00000503756 657 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 RNU6-182P-201ENST00000516970 105 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC012339.2-201ENST00000523996 453 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AP006587.4-201ENST00000526053 529 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 RRN3P3-201ENST00000549207 578 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 HMGB3P26-201ENST00000560051 582 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC093227.2-201ENST00000589357 285 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 HMGB2P1-201ENST00000591146 634 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC104687.2-201ENST00000604442 342 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC137590.2-201ENST00000619709 240 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 AC093849.1-201ENST00000563631 2209 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
USP3Q9Y6I4 HSPA8P4-201ENST00000511877 1920 ntBASIC5.6□□□□□ -1.51
USP3Q9Y6I4 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 Y_RNA.60-201ENST00000362831 98 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 RNU4-50P-201ENST00000364361 141 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 RNU4-42P-201ENST00000364738 142 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 RNU6-1329P-201ENST00000365664 107 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 MIR223-201ENST00000385204 110 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AL590704.1-201ENST00000402856 794 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 SYF2P2-201ENST00000417620 583 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 DPPA2P2-201ENST00000418220 897 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AL133396.1-201ENST00000432048 687 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AL132765.1-201ENST00000434165 553 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 CYCSP43-201ENST00000438233 310 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 PTMAP6-201ENST00000439110 327 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AL590664.1-201ENST00000448065 339 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 FCF1P4-201ENST00000448326 183 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AC090804.1-201ENST00000448870 490 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 RPL10P17-201ENST00000453852 316 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 PCMTD1P1-201ENST00000455560 355 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 RPL23AP31-201ENST00000456160 467 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AC069499.1-201ENST00000489433 509 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 RPS4XP20-201ENST00000505751 772 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 SNORA25.11-201ENST00000515935 105 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 RN7SKP82-201ENST00000516786 223 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 LECT2-205ENST00000522943 574 ntTSL 3 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 HSPE1P20-201ENST00000538133 289 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 GSTP1P1-201ENST00000548078 319 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AC127381.1-201ENST00000555979 939 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms