Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RNU4-44P-201ENST00000363050 141 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RNY3P11-201ENST00000364153 102 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RNU6-611P-201ENST00000384276 104 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.555-201ENST00000384673 110 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RNU6-882P-201ENST00000391025 103 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RNU6-700P-201ENST00000391043 107 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AL121835.1-201ENST00000404250 354 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 CYCSP33-201ENST00000414485 327 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 EIF4A1P7-201ENST00000421800 1220 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 MTND5P15-201ENST00000434246 349 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 USP9YP7-201ENST00000436723 430 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 USP9YP32-201ENST00000452432 430 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 FRG2FP-204ENST00000453982 852 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RPL23AP2-201ENST00000471227 466 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC012123.2-201ENST00000485809 248 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RNU6-138P-201ENST00000515952 107 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.673-201ENST00000516306 88 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RNU6-143P-201ENST00000516942 93 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC091144.1-201ENST00000519573 138 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC034114.1-201ENST00000520293 285 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 HIGD1AP5-201ENST00000529959 259 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 TRAV32-201ENST00000553993 340 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC119403.2-201ENST00000590960 598 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 uc_338.26-201ENST00000612659 160 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RMST_4.1-201ENST00000616886 107 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AC137590.2-201ENST00000619709 240 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AP001005.3-201ENST00000622049 129 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 ZNF299P-201ENST00000406845 1804 ntBASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.20-201ENST00000362479 113 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.183-201ENST00000363882 113 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 U8.8-201ENST00000365399 135 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.471-201ENST00000384312 102 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 MIR301A-201ENST00000385261 86 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 GLULP6-201ENST00000399502 913 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 RN7SKP125-201ENST00000410481 302 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 RPL37P18-201ENST00000411602 243 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 RPL7L1P9-201ENST00000431298 745 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AL590399.4-201ENST00000436561 601 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 OARD1-211ENST00000480585 829 ntTSL 3 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC012158.1-204ENST00000483430 465 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 RNU6-927P-201ENST00000516199 100 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 RNU6-397P-201ENST00000516226 104 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 SNORA31.22-201ENST00000517204 135 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC008694.2-201ENST00000517591 306 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 HMGN2P6-201ENST00000551091 273 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC126177.3-201ENST00000551839 688 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 Mico1.1-201ENST00000611698 204 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 DLEU2_2.2-201ENST00000615474 90 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 AL512643.1-201ENST00000635735 524 ntBASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
LIMD1Q9UGP4 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
LIMD1Q9UGP4 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms