Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 NACA3P-201ENST00000359690 648 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 MIR506-201ENST00000384998 124 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 SNORA48.2-201ENST00000390926 124 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 RNA5SP129-201ENST00000410276 118 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC068533.2-201ENST00000411872 306 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC092447.6-201ENST00000414578 210 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC106883.1-201ENST00000418805 562 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 NANOGP5-201ENST00000424456 877 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 RPL35AP12-201ENST00000425362 338 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC092648.1-201ENST00000425870 423 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC092427.1-201ENST00000439177 601 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 ZNF886P-201ENST00000450781 723 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 ARPC3P2-201ENST00000457786 533 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 RPS29P26-201ENST00000477483 171 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC134050.1-201ENST00000495088 933 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 HMGB1P28-201ENST00000507778 552 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 MTND4LP22-201ENST00000508209 276 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC010265.1-201ENST00000513509 211 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 MTCO2P32-201ENST00000514865 403 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AADACP1-206ENST00000561502 1193 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AC012669.1-201ENST00000603209 283 ntBASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS54Q9P1Q0 ZNF833P-201ENST00000424938 1494 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 RNU4-68P-201ENST00000364314 141 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 SNORD116.1-201ENST00000365628 92 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 RNU6-413P-201ENST00000384115 107 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 ERHP2-201ENST00000402323 299 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AL590084.1-201ENST00000407885 387 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 RNA5SP80-201ENST00000410475 111 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 MTCYBP11-201ENST00000447254 1109 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 RPL39P6-201ENST00000448289 150 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 SSXP4-201ENST00000451349 245 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AL445669.2-201ENST00000454425 421 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 DUXAP8-207ENST00000456786 622 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 snoU13.4-201ENST00000458916 104 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 MTCO3P35-201ENST00000485582 781 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC114322.1-201ENST00000506771 926 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC026412.2-201ENST00000512270 1075 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC005832.3-201ENST00000537929 631 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 EEF1B2P4-201ENST00000551398 348 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 H3F3AP1-201ENST00000559984 334 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AC245884.10-201ENST00000597355 337 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 DUXAP10-204ENST00000612052 616 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 AP001002.2-201ENST00000625137 386 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 OR4G3P-201ENST00000633500 913 ntBASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS54Q9P1Q0 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 CDR1-202ENST00000625883 1485 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 OR5H2-201ENST00000355273 945 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 RNU6-1242P-201ENST00000391052 103 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 RNU2-15P-201ENST00000410692 191 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 PSMA6P3-201ENST00000428242 164 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC022018.1-201ENST00000430685 241 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 HIGD1AP11-201ENST00000438361 280 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 CYCSP32-201ENST00000440548 321 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 S100A11P2-201ENST00000467589 312 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AP002884.2-201ENST00000471647 395 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 GTF2IP9-201ENST00000502460 301 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 MTCYBP17-201ENST00000503579 789 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC118282.1-201ENST00000506408 765 ntBASIC3.36□□□□□ -1.87
VPS54Q9P1Q0 AC006390.1-201ENST00000508068 283 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms