Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC109486.1-201ENST00000486833 374 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC019227.1-201ENST00000526902 510 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 SNRPGP18-201ENST00000553000 214 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AADACP1-206ENST00000561502 1193 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC113194.1-201ENST00000606037 500 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC103710.1-201ENST00000610003 901 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 AC034102.8-201ENST00000615146 484 ntBASIC1.99□□□□□ -2.09
SCN3AQ9NY46 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SCN3AQ9NY46 RNU6-386P-201ENST00000362650 107 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC092427.1-202ENST00000430569 476 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 RPL17P49-201ENST00000443728 411 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC096638.1-201ENST00000444678 216 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 RPS29P21-201ENST00000496272 170 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC025459.1-201ENST00000504072 156 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC008494.2-201ENST00000514544 370 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC008562.1-201ENST00000521763 330 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AL049870.4-201ENST00000555741 486 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 LRRC37A5P-203ENST00000580181 585 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC073387.2-201ENST00000604797 784 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AL450472.3-201ENST00000615578 367 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 MIR6076-201ENST00000617521 113 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC009487.4-201ENST00000624969 3585 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 FAM133CP-201ENST00000332869 704 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 RNU6-185P-201ENST00000384421 107 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 MTND4P13-201ENST00000402078 1023 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 MIR1250-201ENST00000408098 113 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 MIR1261-201ENST00000408659 82 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 RNU4-65P-201ENST00000410473 140 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC234782.4-201ENST00000417646 1048 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 BX276092.3-201ENST00000424182 230 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 SSXP4-201ENST00000451349 245 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 NF1P3-201ENST00000457709 450 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 RPS23P3-201ENST00000470993 430 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 HMGN2P13-201ENST00000476476 274 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 GZMAP1-201ENST00000503054 631 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC087373.1-201ENST00000524920 491 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AL442163.2-201ENST00000553912 710 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC1.98□□□□□ -2.09
SCN3AQ9NY46 TUG1_1.1-201ENST00000610654 145 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 AC119674.1-220ENST00000641502 1048 ntBASIC1.98□□□□□ -2.09
SCN3AQ9NY46 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 SNORA67.3-201ENST00000384366 140 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AL591034.1-201ENST00000407447 340 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AF274854.1-201ENST00000413236 615 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 XKRYP6-201ENST00000440468 1116 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 XKRYP3-201ENST00000442113 1116 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AL591719.1-201ENST00000444669 744 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 HMGB1P48-201ENST00000446155 598 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AP004371.1-201ENST00000525240 214 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 NOP56P3-201ENST00000549457 385 ntBASIC1.97□□□□□ -2.09
SCN3AQ9NY46 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.97□□□□□ -2.09
SCN3AQ9NY46 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.09
SCN3AQ9NY46 RNU6-670P-201ENST00000364312 104 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 RNA5SP37-201ENST00000365420 130 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC1.96□□□□□ -2.09
SCN3AQ9NY46 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC1.96□□□□□ -2.09
SCN3AQ9NY46 AC004866.2-201ENST00000438285 481 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.96□□□□□ -2.09
SCN3AQ9NY46 SNRPGP16-201ENST00000533275 226 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 POLR2KP1-201ENST00000553226 168 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 AC023158.1-201ENST00000561632 1025 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC1.96□□□□□ -2.09
SCN3AQ9NY46 AC020895.1-201ENST00000595362 272 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.96□□□□□ -2.09
SCN3AQ9NY46 AL391597.1-201ENST00000618707 694 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 AC090617.7-201ENST00000623952 126 ntBASIC1.96□□□□□ -2.09
SCN3AQ9NY46 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 IL33-203ENST00000456383 2501 ntTSL 5 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 DEFB109C-201ENST00000382575 264 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 DEFB109B-201ENST00000382656 264 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 SNORA40.18-201ENST00000391200 128 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC010881.1-201ENST00000433830 235 ntBASIC1.96□□□□□ -2.1
SCN3AQ9NY46 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms