Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC000403.1-201ENST00000613696 3585 ntBASIC3.82□□□□□ -1.8
ZNF541Q9H0D2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 SNORA4.1-201ENST00000364263 144 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL138878.1-201ENST00000405131 347 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 RNU2-15P-201ENST00000410692 191 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL139281.1-201ENST00000422120 335 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL049610.1-201ENST00000423374 372 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC234781.2-201ENST00000426370 994 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL035407.1-201ENST00000429211 571 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL008629.1-201ENST00000438615 184 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 MTCYBP31-201ENST00000438855 1122 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL109741.2-201ENST00000455561 343 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 RPS20P32-201ENST00000456044 356 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 HMGB3P30-201ENST00000457863 606 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 RPS4XP2-201ENST00000458402 793 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL139824.2-201ENST00000458731 1095 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC068587.2-201ENST00000478386 781 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC104685.1-201ENST00000502445 371 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC010625.1-201ENST00000511296 403 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 RFPL1S-203ENST00000539579 330 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 CBX3P5-201ENST00000552017 521 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 HMGB1P6-201ENST00000569046 646 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC080013.4-201ENST00000607624 649 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AC006329.2-201ENST00000611491 394 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 uc_338.1-201ENST00000612113 180 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 AL136981.2-201ENST00000617319 734 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 SNORD39.4-201ENST00000620099 78 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 MTND2P41-201ENST00000637599 773 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 NUP58P1-201ENST00000502546 1738 ntBASIC3.81□□□□□ -1.8
ZNF541Q9H0D2 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 MTND5P24-201ENST00000438892 1767 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 RNU6-621P-201ENST00000364752 109 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 RNU6-339P-201ENST00000384310 107 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 RNU6-837P-201ENST00000391056 108 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AL031679.1-201ENST00000400616 525 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 NUP35P1-201ENST00000422734 947 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC105272.1-201ENST00000438604 198 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC093156.1-201ENST00000440382 670 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC016696.1-201ENST00000446949 318 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 MTND1P31-201ENST00000449206 961 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 MTCO3P20-201ENST00000454926 688 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC097493.1-201ENST00000463958 372 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 TMEM251P1-201ENST00000503717 318 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC006390.1-201ENST00000508068 283 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 RNA5SP367-201ENST00000516557 118 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 HSPE1P3-201ENST00000559254 309 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 MIR4738-201ENST00000579134 87 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 ATP1B3P1-201ENST00000605365 821 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 HMGN2P28-201ENST00000606102 262 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AP002791.1-201ENST00000623291 381 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AC079416.3-201ENST00000624479 549 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 AL356473.1-201ENST00000406203 1408 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 ZNF542P-204ENST00000482727 1305 ntBASIC3.8□□□□□ -1.8
ZNF541Q9H0D2 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
ZNF541Q9H0D2 ZNF826P-207ENST00000622273 1910 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms