Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC091903.1-201ENST00000624322 454 ntBASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 MIR3974-201ENST00000637126 96 ntBASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 U6.101-201ENST00000637707 76 ntBASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 AC002546.1-201ENST00000588041 2504 ntBASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 AC011477.1-204ENST00000623416 1325 ntBASIC3.19□□□□□ -1.9
CCDC28BQ9BUN5 Y_RNA.18-201ENST00000362461 102 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RNU6-600P-201ENST00000362524 99 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RNU1-70P-201ENST00000362618 164 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RNU6-253P-201ENST00000384730 105 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 MIR1250-201ENST00000408098 113 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RNA5SP229-201ENST00000410809 99 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 OR1AA1P-201ENST00000419597 916 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 OFD1P18Y-201ENST00000420889 959 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 USP9YP26-201ENST00000421008 661 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL390023.1-201ENST00000428836 262 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL445567.1-201ENST00000439121 144 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RPS29P7-201ENST00000439662 171 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 ATP5C1P1-201ENST00000441945 895 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 ARPC3P5-201ENST00000448802 534 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 USP9YP34-201ENST00000453983 808 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL590639.1-201ENST00000456484 337 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RNU7-125P-201ENST00000458760 62 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RPL21P8-201ENST00000465083 535 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC111000.2-201ENST00000507775 550 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RN7SKP18-201ENST00000516005 275 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RNA5SP76-201ENST00000516277 87 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC104986.1-201ENST00000517978 436 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC239860.2-201ENST00000525886 270 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC010653.1-201ENST00000571108 881 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 OR4G1P-201ENST00000588632 938 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC012119.1-201ENST00000603184 222 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL133393.1-201ENST00000603277 287 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 YWHAQP7-201ENST00000603536 658 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 Z99497.2-201ENST00000603634 310 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 BNIP3P11-201ENST00000603878 563 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 BX323046.1-201ENST00000610145 535 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 ZYXP1-201ENST00000617638 118 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC009318.4-201ENST00000620496 486 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 CYP3A51P-201ENST00000633513 256 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 AC087359.1-201ENST00000508335 1740 ntBASIC3.18□□□□□ -1.9
CCDC28BQ9BUN5 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 MTCO1P24-201ENST00000515438 1558 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 RNU6-462P-201ENST00000362659 105 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 RNU6-730P-201ENST00000383954 104 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 SNORD116-2-201ENST00000384274 95 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 SNORD116-6-201ENST00000384711 96 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 SAR1AP2-201ENST00000392696 594 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC016769.3-201ENST00000396562 315 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 CYCSP45-201ENST00000402289 315 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC090960.1-201ENST00000421072 306 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 OR51AB1P-201ENST00000429046 620 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 ATP5JP1-201ENST00000431631 322 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 RPL36AP33-201ENST00000450395 310 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 PABPC1P3-201ENST00000469174 459 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 HSPE1P23-201ENST00000509838 286 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 RN7SKP43-201ENST00000516173 320 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC103843.2-201ENST00000530523 682 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 OR7K1P-201ENST00000546439 926 ntBASIC3.17□□□□□ -1.9
CCDC28BQ9BUN5 AC135628.1-201ENST00000568867 534 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms