Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 ZNF192P1-203ENST00000565888 810 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 OR4K8P-201ENST00000578842 1048 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC090616.5-202ENST00000582111 297 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC093227.2-201ENST00000589357 285 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 SNRPGP15-201ENST00000600149 222 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 PRELID3BP8-201ENST00000604148 295 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC011816.2-201ENST00000607089 556 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 MESTIT1_2.1-201ENST00000616328 235 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC244517.1-201ENST00000606030 2086 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
NKX3-1Q99801 CCT4P2-201ENST00000233836 1548 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC010733.2-201ENST00000589496 5702 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
NKX3-1Q99801 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
NKX3-1Q99801 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
NKX3-1Q99801 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.21□□□□□ -1.9
NKX3-1Q99801 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 RN7SKP280-201ENST00000364196 304 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
NKX3-1Q99801 RNU6-837P-201ENST00000391056 108 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL590704.1-201ENST00000402856 794 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 HMGB3P20-201ENST00000417997 600 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL389915.1-201ENST00000422463 466 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 AC079780.1-201ENST00000428259 207 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 THAP5P1-201ENST00000439089 262 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL360221.1-201ENST00000445989 335 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 NANOGP10-201ENST00000453325 895 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL136097.1-201ENST00000456945 913 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 RPL31P3-201ENST00000458430 332 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 snoU13.8-201ENST00000458890 104 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 AC025881.1-201ENST00000518851 512 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 RPL12P22-201ENST00000519073 490 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 NDUFB9P3-201ENST00000521269 501 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AC008489.1-201ENST00000524271 483 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AP003497.1-201ENST00000528472 562 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AC068587.4-201ENST00000533893 186 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
NKX3-1Q99801 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 AC034105.4-201ENST00000568304 277 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 MIR5685-201ENST00000579080 79 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 KLKP1-201ENST00000595979 403 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 AL158063.1-201ENST00000615349 536 ntBASIC3.21□□□□□ -1.9
NKX3-1Q99801 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
NKX3-1Q99801 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
NKX3-1Q99801 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NKX3-1Q99801 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
NKX3-1Q99801 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
NKX3-1Q99801 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 PRO1804-201ENST00000623780 2050 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
NKX3-1Q99801 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
NKX3-1Q99801 FRG1BP-201ENST00000278882 761 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 Y_RNA.51-201ENST00000362725 102 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 RNU6-97P-201ENST00000363387 104 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 RNU5F-7P-201ENST00000363696 115 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 RNA5SP189-201ENST00000364920 115 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 RNA5SP97-201ENST00000365006 84 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 RNU6-809P-201ENST00000384461 107 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 MIR23B-201ENST00000384832 97 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 SNORA48.7-201ENST00000391302 135 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 RPS3AP26-201ENST00000398259 784 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 HSPE1P26-201ENST00000405341 275 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 CYCSP19-201ENST00000411715 316 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AIMP1P1-201ENST00000418670 937 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC010153.1-201ENST00000432862 727 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 MRPS31P2-201ENST00000451581 518 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 SNORA84-201ENST00000459229 133 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 HMGB1P22-201ENST00000505315 124 ntBASIC3.2□□□□□ -1.9
NKX3-1Q99801 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.2□□□□□ -1.9
NKX3-1Q99801 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 148 ms