Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC4.62□□□□□ -1.67
NUP88Q99567 AL356432.3-201ENST00000568952 465 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 OR4K8P-201ENST00000578842 1048 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 UBE2L4-201ENST00000587688 464 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.62□□□□□ -1.67
NUP88Q99567 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.62□□□□□ -1.67
NUP88Q99567 AC091834.1-201ENST00000614543 472 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AL158801.5-201ENST00000623123 465 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 CR392039.5-201ENST00000623201 510 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AL359740.1-201ENST00000624340 592 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AP005264.7-201ENST00000625003 745 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AL159972.1-201ENST00000625150 448 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 AC012442.3-202ENST00000636742 206 ntBASIC4.62□□□□□ -1.67
NUP88Q99567 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NUP88Q99567 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NUP88Q99567 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
NUP88Q99567 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.62□□□□□ -1.67
NUP88Q99567 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
NUP88Q99567 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
NUP88Q99567 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
NUP88Q99567 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.61□□□□□ -1.67
NUP88Q99567 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
NUP88Q99567 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 RNU6-1215P-201ENST00000384441 102 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AL590704.1-201ENST00000402856 794 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 RNU6ATAC-201ENST00000408749 126 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 RNA5SP39-201ENST00000411245 120 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 RPS7P15-201ENST00000415804 584 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 MTCO3P12-201ENST00000416718 547 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 CCDC58P2-201ENST00000417131 366 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.61□□□□□ -1.67
NUP88Q99567 RABEPKP1-201ENST00000440529 1026 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 PGBD4P3-201ENST00000440731 581 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.61□□□□□ -1.67
NUP88Q99567 RAC1P7-201ENST00000445367 377 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC011825.1-201ENST00000484967 388 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AP002812.1-201ENST00000495378 474 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 RNU6-720P-201ENST00000516363 108 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC103783.1-201ENST00000520506 373 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.61□□□□□ -1.67
NUP88Q99567 AC025165.5-201ENST00000602802 578 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AC006254.3-201ENST00000603353 884 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AL158211.4-201ENST00000606988 584 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 OR6R2P-201ENST00000609216 300 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AC090970.3-201ENST00000612566 866 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 AC072046.2-201ENST00000618366 268 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.61□□□□□ -1.67
NUP88Q99567 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.61□□□□□ -1.67
NUP88Q99567 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
NUP88Q99567 AC027514.1-201ENST00000588561 1603 ntBASIC4.61□□□□□ -1.67
NUP88Q99567 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
NUP88Q99567 FARSBP1-201ENST00000435808 1778 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NUP88Q99567 AC090337.1-201ENST00000579651 2074 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NUP88Q99567 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
NUP88Q99567 PTMAP2-201ENST00000397627 327 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.6□□□□□ -1.67
NUP88Q99567 RNU6-648P-201ENST00000410190 107 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 RNU2-8P-201ENST00000410727 190 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 RNU6-195P-201ENST00000411352 109 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 HMGN1P24-201ENST00000412282 298 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
NUP88Q99567 AC018644.1-201ENST00000429934 551 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 AC119618.1-201ENST00000434191 222 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.6□□□□□ -1.67
NUP88Q99567 AL031667.1-201ENST00000440222 725 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 USP9YP15-201ENST00000442391 422 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 AL121871.1-201ENST00000443413 436 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC4.6□□□□□ -1.67
NUP88Q99567 RPS17P13-201ENST00000448974 407 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 AC010655.1-201ENST00000449336 292 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.6□□□□□ -1.67
NUP88Q99567 AC034236.1-201ENST00000469891 373 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.6□□□□□ -1.67
NUP88Q99567 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
NUP88Q99567 AL358832.1-201ENST00000497800 389 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 RNA5SP143-201ENST00000516936 115 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 AP004371.1-201ENST00000525240 214 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 AP003122.4-201ENST00000530980 758 ntBASIC4.6□□□□□ -1.67
NUP88Q99567 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms