Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNU6-202P-201ENST00000515998 96 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC42Q96M95 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC021269.2-201ENST00000532318 330 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 ERP27-202ENST00000540097 993 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC084033.1-201ENST00000550830 633 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC42Q96M95 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC008739.2-201ENST00000597006 317 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC025588.3-201ENST00000604182 274 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC007621.1-201ENST00000604544 437 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 HSPE1P7-201ENST00000604681 321 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 AL137843.1-201ENST00000605078 385 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 AC090116.1-201ENST00000615679 446 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 AL109659.3-201ENST00000624985 950 ntBASIC2.49□□□□□ -2.01
CCDC42Q96M95 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.49□□□□□ -2.01
CCDC42Q96M95 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC42Q96M95 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC42Q96M95 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC42Q96M95 AL359693.1-201ENST00000614959 2407 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 RNU6-712P-201ENST00000410558 100 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 RN7SKP140-201ENST00000411196 284 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC099677.1-201ENST00000420575 175 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC091390.3-201ENST00000426478 338 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC011753.1-201ENST00000451001 220 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 RPS3AP14-201ENST00000483907 780 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC42Q96M95 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC097462.2-201ENST00000504623 481 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 MLLT10P2-201ENST00000506434 249 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 MTCO3P42-201ENST00000509488 518 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 MTCO3P39-201ENST00000514812 518 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 MIR4319-201ENST00000577285 85 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC103810.6-201ENST00000606708 136 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC135507.2-201ENST00000612443 309 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 ZNF519P1-201ENST00000449011 1626 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC012321.1-201ENST00000561622 1588 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 AC007336.1-201ENST00000576365 3828 ntBASIC2.48□□□□□ -2.01
CCDC42Q96M95 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC42Q96M95 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC42Q96M95 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 MIR208A-201ENST00000362287 71 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 RNU5D-1-201ENST00000363299 116 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 MIR627-201ENST00000384979 97 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 DHFRP5-201ENST00000406944 564 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 RNU6-272P-201ENST00000411028 104 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC007064.1-201ENST00000412238 351 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 RPS15AP38-201ENST00000413110 372 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC025750.2-201ENST00000442609 450 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 RPS3AP12-201ENST00000443616 753 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 RAD1P2-201ENST00000446414 663 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AL359385.1-201ENST00000456509 365 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC015724.1-201ENST00000478577 156 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC104435.1-201ENST00000483483 166 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 SUB1P1-201ENST00000524415 382 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 HMGB1P6-201ENST00000569046 646 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC106028.5-201ENST00000610332 395 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AL392048.1-201ENST00000613946 534 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 MIR6766-201ENST00000622641 72 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 LINC00216-201ENST00000623548 1126 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 AL160394.1-201ENST00000624765 724 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 AC017104.5-201ENST00000637647 639 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 BX649567.1-201ENST00000642071 1134 ntBASIC2.47□□□□□ -2.01
CCDC42Q96M95 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.47□□□□□ -2.01
CCDC42Q96M95 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC42Q96M95 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.46□□□□□ -2.01
CCDC42Q96M95 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC42Q96M95 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.46□□□□□ -2.02
CCDC42Q96M95 AC062016.1-201ENST00000355719 319 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 RNA5SP68-201ENST00000363885 119 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 RNU6-1074P-201ENST00000383995 104 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 RNU6-1151P-201ENST00000384684 107 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 AL591416.1-201ENST00000404015 867 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 RPL7P30-201ENST00000420888 709 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC42Q96M95 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC42Q96M95 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC42Q96M95 RPL7P37-201ENST00000425095 738 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 AC010881.1-201ENST00000433830 235 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 AL590762.3-201ENST00000436372 640 ntBASIC2.46□□□□□ -2.02
CCDC42Q96M95 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC42Q96M95 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC42Q96M95 RBM43P1-201ENST00000476891 1081 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms