Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
VMP1Q96GC9 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
VMP1Q96GC9 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VMP1Q96GC9 SDAD1P2-201ENST00000441308 2028 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VMP1Q96GC9 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VMP1Q96GC9 SNORA5A-201ENST00000384111 134 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 SNORA36C-201ENST00000384289 132 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 RNA5SP293-201ENST00000410527 113 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 RNU4-22P-201ENST00000411058 166 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 BX119904.4-201ENST00000424402 301 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VMP1Q96GC9 RPL23AP58-201ENST00000440453 469 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 OR10R1P-201ENST00000441524 1141 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 snoU13.28-201ENST00000459235 104 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC091564.1-201ENST00000464563 479 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC116353.3-201ENST00000511215 249 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 RN7SKP18-201ENST00000516005 275 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 SCARNA15.2-201ENST00000516409 127 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC009712.1-201ENST00000564938 316 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC010653.1-201ENST00000571108 881 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 MIR4509-3-201ENST00000578671 94 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 MIR4509-2-201ENST00000583920 94 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 KLKP1-201ENST00000595979 403 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC013553.2-201ENST00000604244 589 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC107075.1-201ENST00000613695 314 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 MIR4509-1-201ENST00000618224 94 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.44□□□□□ -1.86
VMP1Q96GC9 PWAR6-201ENST00000552334 4618 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 AC099786.3-201ENST00000565735 1410 ntBASIC3.44□□□□□ -1.86
VMP1Q96GC9 OR4G2P-202ENST00000641004 1759 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC099654.7-201ENST00000635788 2127 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 RNU1-75P-201ENST00000347264 129 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RNU5E-8P-201ENST00000363502 116 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RNU4-68P-201ENST00000364314 141 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RNU6-805P-201ENST00000365643 106 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AP002088.1-201ENST00000382740 395 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RNU6-637P-201ENST00000384050 107 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RNU6-198P-201ENST00000384258 104 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 TAF9BP1-201ENST00000396646 746 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AL356421.1-201ENST00000403255 413 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AL136116.1-201ENST00000403591 381 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 TPMTP3-201ENST00000411928 735 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 SPA17P1-201ENST00000416656 452 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RPL23AP82-202ENST00000427528 469 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC008850.1-201ENST00000427546 362 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AL158071.1-201ENST00000430315 461 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 ZYG11AP1-201ENST00000430329 837 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 BX679664.1-201ENST00000434429 253 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 SNRPEP7-201ENST00000438350 220 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 MTND1P31-201ENST00000449206 961 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RPL21P134-201ENST00000453468 483 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 MTND1P9-201ENST00000453775 944 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC099563.1-201ENST00000456086 418 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 RN7SL442P-201ENST00000473804 320 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 RPS4XP22-201ENST00000480755 780 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC108729.1-201ENST00000487812 947 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 RNU6-1282P-201ENST00000516735 96 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC124947.2-202ENST00000552735 133 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 MTND3P19-201ENST00000603825 345 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC068313.1-201ENST00000604028 1008 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AL133507.1-201ENST00000605269 557 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 UGP2-231ENST00000627474 264 ntTSL 5 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC099654.9-201ENST00000637055 678 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AL392088.2-201ENST00000637607 285 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 OR5H6-203ENST00000642105 978 ntBASIC3.43□□□□□ -1.86
VMP1Q96GC9 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.43□□□□□ -1.86
VMP1Q96GC9 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
VMP1Q96GC9 Z83843.1-201ENST00000604070 3685 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms