Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC007016.1-201ENST00000512110 244 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RN7SKP46-201ENST00000515942 234 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 RAB9BP1-201ENST00000519581 626 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC022616.6-201ENST00000520479 119 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AL845331.3-202ENST00000562856 261 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC015917.1-201ENST00000579654 510 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 MIR3682-201ENST00000581338 84 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 SNORD84-203ENST00000584275 78 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 NRBF2P1-201ENST00000587407 859 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC022726.1-201ENST00000587475 207 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC011712.1-201ENST00000588959 234 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC068790.3-201ENST00000602988 553 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AC012507.3-201ENST00000603556 477 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 Z98200.1-201ENST00000607298 470 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 AP000346.3-201ENST00000622821 210 ntBASIC4.59□□□□□ -1.67
CLIP3Q96DZ5 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
CLIP3Q96DZ5 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
CLIP3Q96DZ5 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC024560.2-201ENST00000507981 1497 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC010928.1-201ENST00000592477 1447 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AL590240.1-201ENST00000334118 313 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RNA5SP235-201ENST00000365411 114 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 SNORD3H-201ENST00000384486 214 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 U3.30-201ENST00000391308 210 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RNA5SP118-201ENST00000410385 109 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RN7SKP106-201ENST00000410832 272 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 FAR2P2-201ENST00000413041 594 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 MTND3P17-201ENST00000416968 344 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 DNAJC19P7-201ENST00000428811 344 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 SAR1AP4-201ENST00000429225 591 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AL049734.2-201ENST00000441066 616 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RPL17P49-201ENST00000443728 411 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AL513533.1-201ENST00000453728 415 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC233279.1-201ENST00000455300 423 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RN7SL481P-201ENST00000477764 299 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RPL7P23-201ENST00000493874 747 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RNU6-277P-201ENST00000516272 106 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 Y_RNA.719-201ENST00000517156 106 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC105029.1-201ENST00000520250 669 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC007151.1-201ENST00000572774 483 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 OR4K8P-201ENST00000578842 1048 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC018638.8-201ENST00000588755 281 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC245014.2-201ENST00000603689 287 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC007621.1-201ENST00000604544 437 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC246785.4-201ENST00000605374 287 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AL121932.1-201ENST00000605542 214 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 RNU6-87P-201ENST00000607561 108 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 SNORD91B-202ENST00000608459 222 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AL355472.4-201ENST00000610233 626 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AC015813.4-201ENST00000610469 179 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 AL022401.1-201ENST00000619498 108 ntBASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.58□□□□□ -1.68
CLIP3Q96DZ5 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 AC004925.1-201ENST00000624256 2706 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RNU6-282P-201ENST00000365357 103 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 MIR141-201ENST00000384975 95 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RN7SKP177-201ENST00000410567 355 ntBASIC4.57□□□□□ -1.68
CLIP3Q96DZ5 RNA5SP345-201ENST00000410646 108 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms