Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HPS3Q969F9 OR5AK4P-201ENST00000635912 903 ntBASIC4.51□□□□□ -1.69
HPS3Q969F9 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.51□□□□□ -1.69
HPS3Q969F9 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
HPS3Q969F9 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HPS3Q969F9 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.51□□□□□ -1.69
HPS3Q969F9 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HPS3Q969F9 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 RNA5SP130-201ENST00000364431 114 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 RNU6-278P-201ENST00000390945 109 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 RPL23AP32-201ENST00000395315 459 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 RNU6-516P-201ENST00000411381 104 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 HSPE1P12-201ENST00000412576 301 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 MTCO3P12-201ENST00000416718 547 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC099677.1-201ENST00000420575 175 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC244098.2-201ENST00000422068 99 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 RPL35AP22-201ENST00000436855 335 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC108059.3-201ENST00000456388 214 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 RPL36AP13-201ENST00000457490 317 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 KCTD9P5-201ENST00000504141 1170 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 RNU6-798P-201ENST00000516912 103 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
HPS3Q969F9 MRPL49P2-201ENST00000521066 465 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 MIR3146-201ENST00000580367 79 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 VN1R79P-201ENST00000593540 513 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 KC877982.1-201ENST00000602313 470 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AC012669.1-201ENST00000603209 283 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC095031.1-201ENST00000623685 672 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.5□□□□□ -1.69
HPS3Q969F9 AC244258.1-201ENST00000637553 1071 ntBASIC4.5□□□□□ -1.69
HPS3Q969F9 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
HPS3Q969F9 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HPS3Q969F9 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HPS3Q969F9 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HPS3Q969F9 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
HPS3Q969F9 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.5□□□□□ -1.69
HPS3Q969F9 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HPS3Q969F9 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HPS3Q969F9 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
HPS3Q969F9 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
HPS3Q969F9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HPS3Q969F9 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.49□□□□□ -1.69
HPS3Q969F9 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HPS3Q969F9 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.49□□□□□ -1.69
HPS3Q969F9 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.49□□□□□ -1.69
HPS3Q969F9 SNORD74.4-201ENST00000364129 80 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 Y_RNA.296-201ENST00000364930 108 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.49□□□□□ -1.69
HPS3Q969F9 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.49□□□□□ -1.69
HPS3Q969F9 Y_RNA.516-201ENST00000384541 124 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 MIR1183-201ENST00000408856 89 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AC127391.1-201ENST00000411737 98 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 OR1AA1P-201ENST00000419597 916 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 PIGFP2-201ENST00000421400 651 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 USP9YP15-201ENST00000442391 422 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.49□□□□□ -1.69
HPS3Q969F9 NANOGNBP1-201ENST00000448444 480 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 RPS11P1-201ENST00000451072 473 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 RPL31P61-201ENST00000496160 376 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.49□□□□□ -1.69
HPS3Q969F9 AC010493.1-201ENST00000513479 292 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.49□□□□□ -1.69
HPS3Q969F9 DEFB108A-201ENST00000530110 222 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.49□□□□□ -1.69
HPS3Q969F9 AC006960.3-201ENST00000561845 705 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AC007224.1-201ENST00000564410 144 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 MIR3118-1-201ENST00000581787 76 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AC008638.3-201ENST00000603341 463 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AC007038.2-201ENST00000608095 740 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AL133173.2-201ENST00000614270 90 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.49□□□□□ -1.69
HPS3Q969F9 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.49□□□□□ -1.69
HPS3Q969F9 AC091953.2-201ENST00000623979 160 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 AP005264.7-201ENST00000625003 745 ntBASIC4.49□□□□□ -1.69
HPS3Q969F9 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HPS3Q969F9 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HPS3Q969F9 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms