Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RPL23AP57-201ENST00000332361 466 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 RNU5E-10P-201ENST00000363506 118 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 U3.42-201ENST00000408746 214 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 RPS15AP38-201ENST00000413110 372 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC007742.1-201ENST00000425789 329 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 ELOCP26-201ENST00000436067 329 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 MTND2P20-201ENST00000440805 661 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AL591503.2-201ENST00000442314 1005 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AL589880.1-201ENST00000448271 287 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 TRGVB-201ENST00000453257 471 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AP001992.1-205ENST00000462248 379 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC104472.2-201ENST00000469035 601 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC090453.1-201ENST00000495560 436 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 TMEM251P1-201ENST00000503717 318 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 HMGB1P28-201ENST00000507778 552 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 CBX3P3-201ENST00000508108 532 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 RN7SKP282-201ENST00000516824 299 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 CA1-215ENST00000522389 551 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC053481.3-201ENST00000577881 843 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AL022099.1-201ENST00000604551 712 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC069304.2-201ENST00000605154 435 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC009570.1-201ENST00000609599 745 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 AC104763.3-201ENST00000613765 618 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 OR4G11P-202ENST00000642116 1414 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 MAPK10-322ENST00000641485 4530 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 SNORA14A-201ENST00000364773 135 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 RNA5SP267-201ENST00000364893 126 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 Y_RNA.472-201ENST00000384322 102 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 MIR887-201ENST00000401258 79 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AL136372.1-201ENST00000403060 228 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC068533.2-201ENST00000411872 306 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 SSXP9-201ENST00000417503 292 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AL137014.1-201ENST00000420490 1226 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AL590233.1-201ENST00000430017 456 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 MUPP-201ENST00000438111 566 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AL358232.1-201ENST00000448030 501 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 RPL32P34-201ENST00000486380 400 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 RN7SL633P-201ENST00000488974 297 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC239860.2-201ENST00000525886 270 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 SLC2A13P1-201ENST00000531560 322 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC007536.1-201ENST00000533382 349 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 MIR4444-1-201ENST00000581696 74 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 MIR4444-2-201ENST00000584390 74 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC005014.3-201ENST00000605985 190 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 PART1_2.1-201ENST00000612397 250 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC025588.4-201ENST00000615802 908 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 MIR7112-201ENST00000616126 65 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 AC244100.1-202ENST00000621554 382 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 CUL1P1-201ENST00000509510 2425 ntBASIC3.34□□□□□ -1.87
CCDC40Q4G0X9 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CCDC40Q4G0X9 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 RNA5SP72-201ENST00000364442 117 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 DHFRP6-201ENST00000401776 268 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 RNA5SP38-201ENST00000410750 119 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 RNA5SP120-201ENST00000410900 112 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 RPS3AP25-201ENST00000411660 793 ntBASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC40Q4G0X9 AL158156.1-201ENST00000422509 473 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms