Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC1.17□□□□□ -2.22
HSPG2P98160 FAM92A1P1-201ENST00000528023 890 ntBASIC1.17□□□□□ -2.22
HSPG2P98160 ZDHHC20P3-201ENST00000531576 336 ntBASIC1.17□□□□□ -2.22
HSPG2P98160 5S_rRNA.12-201ENST00000617631 107 ntBASIC1.17□□□□□ -2.22
HSPG2P98160 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.17□□□□□ -2.22
HSPG2P98160 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 MIR6073-201ENST00000352083 89 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 AC027124.2-201ENST00000428249 105 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 RPS27P5-201ENST00000444247 244 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 AL591719.1-201ENST00000444669 744 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.16□□□□□ -2.22
HSPG2P98160 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 RNU6ATAC39P-201ENST00000516309 149 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 AP002748.2-201ENST00000528671 348 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 AL590762.3-201ENST00000436372 640 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC1.16□□□□□ -2.22
HSPG2P98160 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.16□□□□□ -2.22
HSPG2P98160 AC091488.1-201ENST00000604239 660 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 AP000648.3-201ENST00000623539 4507 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 MTCYBP31-201ENST00000438855 1122 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC1.16□□□□□ -2.22
HSPG2P98160 AP000852.1-201ENST00000472460 573 ntBASIC1.16□□□□□ -2.22
HSPG2P98160 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.16□□□□□ -2.22
HSPG2P98160 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
HSPG2P98160 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC1.16□□□□□ -2.22
HSPG2P98160 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
HSPG2P98160 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC1.16□□□□□ -2.22
HSPG2P98160 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC1.15□□□□□ -2.22
HSPG2P98160 AC234781.4-201ENST00000419384 244 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 HMGB1P27-201ENST00000431429 603 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 RPL23AP44-201ENST00000482216 473 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 ATP5EP1-201ENST00000510257 156 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.15□□□□□ -2.22
HSPG2P98160 CBX3P5-201ENST00000552017 521 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 AL137847.3-201ENST00000611521 109 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 AC034102.8-201ENST00000615146 484 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.15□□□□□ -2.22
HSPG2P98160 AL133216.2-202ENST00000634512 349 ntBASIC1.15□□□□□ -2.22
HSPG2P98160 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC1.15□□□□□ -2.22
HSPG2P98160 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
HSPG2P98160 Y_RNA.36-201ENST00000362602 112 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 SNORA48.3-201ENST00000391081 134 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 AL645939.1-201ENST00000453429 797 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.15□□□□□ -2.23
HSPG2P98160 AC021146.8-201ENST00000507455 733 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.15□□□□□ -2.23
HSPG2P98160 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC1.15□□□□□ -2.23
HSPG2P98160 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC1.15□□□□□ -2.23
HSPG2P98160 AC120053.1-201ENST00000607706 736 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC1.15□□□□□ -2.23
HSPG2P98160 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.15□□□□□ -2.23
HSPG2P98160 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
HSPG2P98160 AC245100.2-201ENST00000454544 1679 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC1.15□□□□□ -2.23
HSPG2P98160 RNA5SP37-201ENST00000365420 130 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 AC019155.1-201ENST00000382242 574 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 BX322784.1-201ENST00000455793 1077 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 AC104564.1-201ENST00000493028 407 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC1.15□□□□□ -2.23
HSPG2P98160 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC1.15□□□□□ -2.23
HSPG2P98160 AC019159.1-201ENST00000605094 187 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.15□□□□□ -2.23
HSPG2P98160 Z82195.2-201ENST00000612348 18351 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 AC006378.2-201ENST00000623178 2476 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
HSPG2P98160 AC013470.3-201ENST00000420252 1194 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.15□□□□□ -2.23
HSPG2P98160 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.15□□□□□ -2.23
HSPG2P98160 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.15□□□□□ -2.23
HSPG2P98160 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
HSPG2P98160 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC1.15□□□□□ -2.23
HSPG2P98160 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
HSPG2P98160 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
HSPG2P98160 FAM35CP-201ENST00000554755 2470 ntBASIC1.14□□□□□ -2.23
HSPG2P98160 AC092473.1-201ENST00000441098 221 ntBASIC1.14□□□□□ -2.23
HSPG2P98160 AC006483.1-201ENST00000487308 313 ntBASIC1.14□□□□□ -2.23
HSPG2P98160 RNU2-58P-201ENST00000516403 183 ntBASIC1.14□□□□□ -2.23
HSPG2P98160 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.14□□□□□ -2.23
HSPG2P98160 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.14□□□□□ -2.23
HSPG2P98160 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.14□□□□□ -2.23
HSPG2P98160 MTND5P27-201ENST00000428871 1720 ntBASIC1.14□□□□□ -2.23
HSPG2P98160 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.14□□□□□ -2.23
HSPG2P98160 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
HSPG2P98160 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.14□□□□□ -2.23
HSPG2P98160 AP000705.1-201ENST00000454567 350 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms