Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL669831.3-213ENST00000636676 183 ntBASIC4.84□□□□□ -1.63
RNF4P78317 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.84□□□□□ -1.63
RNF4P78317 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
RNF4P78317 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.84□□□□□ -1.64
RNF4P78317 SMG1P4-204ENST00000523028 4131 ntBASIC4.84□□□□□ -1.64
RNF4P78317 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
RNF4P78317 DDX10P1-201ENST00000448545 1933 ntBASIC4.84□□□□□ -1.64
RNF4P78317 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.83□□□□□ -1.64
RNF4P78317 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 AC103710.2-202ENST00000641454 2853 ntBASIC4.83□□□□□ -1.64
RNF4P78317 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 AC112198.2-201ENST00000426589 6996 ntBASIC4.83□□□□□ -1.64
RNF4P78317 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.83□□□□□ -1.64
RNF4P78317 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 AL034549.2-201ENST00000618285 3373 ntBASIC4.83□□□□□ -1.64
RNF4P78317 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.83□□□□□ -1.64
RNF4P78317 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 Y_RNA.112-201ENST00000363250 102 ntBASIC4.83□□□□□ -1.64
RNF4P78317 Y_RNA.135-201ENST00000363439 95 ntBASIC4.83□□□□□ -1.64
RNF4P78317 U8.4-201ENST00000363626 134 ntBASIC4.83□□□□□ -1.64
RNF4P78317 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 MIR589-201ENST00000385238 99 ntBASIC4.83□□□□□ -1.64
RNF4P78317 SNORA16.2-201ENST00000390991 127 ntBASIC4.83□□□□□ -1.64
RNF4P78317 CISD1P1-201ENST00000393907 327 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC013442.1-201ENST00000397347 228 ntBASIC4.83□□□□□ -1.64
RNF4P78317 RPL21P67-201ENST00000402896 478 ntBASIC4.83□□□□□ -1.64
RNF4P78317 RNA5SP111-201ENST00000411386 101 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.83□□□□□ -1.64
RNF4P78317 PDSS1P1-201ENST00000422953 1114 ntBASIC4.83□□□□□ -1.64
RNF4P78317 EI24P4-201ENST00000423683 1078 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 MRPL48P1-201ENST00000445390 636 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC090804.1-201ENST00000448870 490 ntBASIC4.83□□□□□ -1.64
RNF4P78317 HMGB3P21-201ENST00000452483 547 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.83□□□□□ -1.64
RNF4P78317 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.83□□□□□ -1.64
RNF4P78317 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 RN7SKP234-201ENST00000517173 224 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.83□□□□□ -1.64
RNF4P78317 AC022790.1-201ENST00000522872 204 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC090115.3-201ENST00000553218 849 ntBASIC4.83□□□□□ -1.64
RNF4P78317 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.83□□□□□ -1.64
RNF4P78317 AC012669.1-201ENST00000603209 283 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC020910.3-201ENST00000603701 874 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AL031320.1-201ENST00000604177 357 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC011626.1-201ENST00000604710 562 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC009570.1-201ENST00000609599 745 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC004696.1-201ENST00000614345 607 ntBASIC4.83□□□□□ -1.64
RNF4P78317 AC133104.2-201ENST00000615272 193 ntBASIC4.83□□□□□ -1.64
RNF4P78317 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 AC018445.2-201ENST00000622987 260 ntBASIC4.83□□□□□ -1.64
RNF4P78317 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 AL049641.1-201ENST00000441055 1948 ntBASIC4.83□□□□□ -1.64
RNF4P78317 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.83□□□□□ -1.64
RNF4P78317 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
RNF4P78317 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.83□□□□□ -1.64
RNF4P78317 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.83□□□□□ -1.64
RNF4P78317 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
RNF4P78317 KPNA2P1-201ENST00000458289 1591 ntBASIC4.82□□□□□ -1.64
RNF4P78317 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
RNF4P78317 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
RNF4P78317 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
RNF4P78317 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 AC108751.5-201ENST00000492880 1336 ntBASIC4.82□□□□□ -1.64
RNF4P78317 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.82□□□□□ -1.64
RNF4P78317 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 OR1L6-202ENST00000373684 1044 ntBASIC4.82□□□□□ -1.64
RNF4P78317 RNU6-196P-201ENST00000384315 107 ntBASIC4.82□□□□□ -1.64
RNF4P78317 MIR135A2-201ENST00000384854 100 ntBASIC4.82□□□□□ -1.64
RNF4P78317 MIR765-201ENST00000390226 114 ntBASIC4.82□□□□□ -1.64
RNF4P78317 RNA5SP241-201ENST00000391326 114 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AL139039.1-201ENST00000401900 692 ntBASIC4.82□□□□□ -1.64
RNF4P78317 GPS2P1-201ENST00000411761 986 ntBASIC4.82□□□□□ -1.64
RNF4P78317 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
RNF4P78317 RPS23P10-201ENST00000416185 486 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.82□□□□□ -1.64
RNF4P78317 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.82□□□□□ -1.64
RNF4P78317 AL138785.1-201ENST00000425821 331 ntBASIC4.82□□□□□ -1.64
RNF4P78317 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.82□□□□□ -1.64
RNF4P78317 AL160004.2-201ENST00000432935 350 ntBASIC4.82□□□□□ -1.64
RNF4P78317 CYCSP43-201ENST00000438233 310 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 186.9 ms