Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.96□□□□□ -1.94
CUX1P39880 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC2.96□□□□□ -1.94
CUX1P39880 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.96□□□□□ -1.94
CUX1P39880 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.96□□□□□ -1.94
CUX1P39880 AC092954.1-201ENST00000609121 445 ntBASIC2.96□□□□□ -1.94
CUX1P39880 AL592437.2-201ENST00000421655 2434 ntBASIC2.96□□□□□ -1.94
CUX1P39880 AL355578.1-201ENST00000607405 1328 ntBASIC2.95□□□□□ -1.94
CUX1P39880 RPS7P9-201ENST00000414704 586 ntBASIC2.95□□□□□ -1.94
CUX1P39880 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.95□□□□□ -1.94
CUX1P39880 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC2.95□□□□□ -1.94
CUX1P39880 SETP8-201ENST00000435341 628 ntBASIC2.95□□□□□ -1.94
CUX1P39880 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC2.95□□□□□ -1.94
CUX1P39880 AC117532.1-201ENST00000514638 323 ntBASIC2.95□□□□□ -1.94
CUX1P39880 AC079362.1-201ENST00000546865 525 ntTSL 3 BASIC2.95□□□□□ -1.94
CUX1P39880 PRELID2P1-201ENST00000552837 301 ntBASIC2.95□□□□□ -1.94
CUX1P39880 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.95□□□□□ -1.94
CUX1P39880 AC090751.1-201ENST00000566966 267 ntBASIC2.95□□□□□ -1.94
CUX1P39880 AC002984.1-201ENST00000591692 448 ntBASIC2.95□□□□□ -1.94
CUX1P39880 AC091488.1-201ENST00000604239 660 ntBASIC2.95□□□□□ -1.94
CUX1P39880 C2orf27A-204ENST00000623058 969 ntBASIC2.95□□□□□ -1.94
CUX1P39880 AC000123.2-201ENST00000623124 461 ntBASIC2.95□□□□□ -1.94
CUX1P39880 AC012321.1-201ENST00000561622 1588 ntBASIC2.95□□□□□ -1.94
CUX1P39880 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CUX1P39880 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
CUX1P39880 AL451074.3-201ENST00000437709 472 ntBASIC2.94□□□□□ -1.94
CUX1P39880 XKRY2-201ENST00000442362 1093 ntBASIC2.94□□□□□ -1.94
CUX1P39880 RPL7P5-201ENST00000471472 736 ntBASIC2.94□□□□□ -1.94
CUX1P39880 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.94□□□□□ -1.94
CUX1P39880 AC010872.1-201ENST00000624225 675 ntBASIC2.94□□□□□ -1.94
CUX1P39880 AC010329.2-201ENST00000595195 2737 ntBASIC2.94□□□□□ -1.94
CUX1P39880 RNA5SP37-201ENST00000365420 130 ntBASIC2.93□□□□□ -1.94
CUX1P39880 HMGB1P10-201ENST00000395823 563 ntBASIC2.93□□□□□ -1.94
CUX1P39880 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.93□□□□□ -1.94
CUX1P39880 TOMM22P1-201ENST00000418578 312 ntBASIC2.93□□□□□ -1.94
CUX1P39880 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC2.93□□□□□ -1.94
CUX1P39880 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC2.93□□□□□ -1.94
CUX1P39880 AC104986.1-201ENST00000517978 436 ntBASIC2.93□□□□□ -1.94
CUX1P39880 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.93□□□□□ -1.94
CUX1P39880 AL645939.4-201ENST00000604495 135 ntBASIC2.93□□□□□ -1.94
CUX1P39880 AL121917.1-203ENST00000605534 577 ntBASIC2.93□□□□□ -1.94
CUX1P39880 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC2.93□□□□□ -1.94
CUX1P39880 MIR6779-201ENST00000617283 64 ntBASIC2.93□□□□□ -1.94
CUX1P39880 MTCO1P6-201ENST00000481192 1384 ntBASIC2.93□□□□□ -1.94
CUX1P39880 UBE2L2-201ENST00000254302 429 ntBASIC2.93□□□□□ -1.94
CUX1P39880 PTP4A1P1-201ENST00000420539 515 ntBASIC2.93□□□□□ -1.94
CUX1P39880 AL590664.1-201ENST00000448065 339 ntBASIC2.93□□□□□ -1.94
CUX1P39880 AC090071.1-201ENST00000507713 644 ntBASIC2.93□□□□□ -1.94
CUX1P39880 ARL2BPP2-201ENST00000550907 489 ntBASIC2.93□□□□□ -1.94
CUX1P39880 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC2.93□□□□□ -1.94
CUX1P39880 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.93□□□□□ -1.94
CUX1P39880 AL035411.2-201ENST00000604022 421 ntBASIC2.93□□□□□ -1.94
CUX1P39880 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
CUX1P39880 XIST_intron.1-201ENST00000619444 68 ntBASIC2.93□□□□□ -1.94
CUX1P39880 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CUX1P39880 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
CUX1P39880 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CUX1P39880 HMGB1P12-201ENST00000438594 598 ntBASIC2.92□□□□□ -1.94
CUX1P39880 AL109741.2-201ENST00000455561 343 ntBASIC2.92□□□□□ -1.94
CUX1P39880 AC092798.1-201ENST00000458542 409 ntBASIC2.92□□□□□ -1.94
CUX1P39880 AC078918.1-201ENST00000498515 228 ntBASIC2.92□□□□□ -1.94
CUX1P39880 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.92□□□□□ -1.94
CUX1P39880 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC2.92□□□□□ -1.94
CUX1P39880 AC034102.8-201ENST00000615146 484 ntBASIC2.92□□□□□ -1.94
CUX1P39880 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.92□□□□□ -1.94
CUX1P39880 CKAP2P1-201ENST00000555477 2049 ntBASIC2.91□□□□□ -1.94
CUX1P39880 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CUX1P39880 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.91□□□□□ -1.94
CUX1P39880 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.91□□□□□ -1.94
CUX1P39880 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CUX1P39880 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC2.91□□□□□ -1.94
CUX1P39880 SSXP1-201ENST00000453640 473 ntBASIC2.91□□□□□ -1.94
CUX1P39880 MTCYBP17-201ENST00000503579 789 ntBASIC2.91□□□□□ -1.94
CUX1P39880 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.91□□□□□ -1.94
CUX1P39880 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.91□□□□□ -1.94
CUX1P39880 AP001542.2-201ENST00000593141 364 ntBASIC2.91□□□□□ -1.94
CUX1P39880 AC131902.3-201ENST00000611767 581 ntBASIC2.91□□□□□ -1.94
CUX1P39880 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.91□□□□□ -1.94
CUX1P39880 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC2.91□□□□□ -1.94
CUX1P39880 RNA5SP27-201ENST00000363839 119 ntBASIC2.9□□□□□ -1.95
CUX1P39880 MIR1323-201ENST00000408090 73 ntBASIC2.9□□□□□ -1.95
CUX1P39880 RPL7P46-201ENST00000425129 740 ntBASIC2.9□□□□□ -1.95
CUX1P39880 AL353597.2-202ENST00000434901 373 ntBASIC2.9□□□□□ -1.95
CUX1P39880 USP9YP10-201ENST00000454868 628 ntBASIC2.9□□□□□ -1.95
CUX1P39880 BX322784.1-201ENST00000455793 1077 ntBASIC2.9□□□□□ -1.95
CUX1P39880 PTP4A1P6-201ENST00000531034 478 ntBASIC2.9□□□□□ -1.95
CUX1P39880 AC024560.3-201ENST00000608482 349 ntBASIC2.9□□□□□ -1.95
CUX1P39880 uc_338.5-201ENST00000611839 155 ntBASIC2.9□□□□□ -1.95
CUX1P39880 RMST_2.1-201ENST00000617263 136 ntBASIC2.9□□□□□ -1.95
CUX1P39880 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.9□□□□□ -1.95
CUX1P39880 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.9□□□□□ -1.95
CUX1P39880 AC005336.3-201ENST00000623833 2679 ntBASIC2.9□□□□□ -1.95
CUX1P39880 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.89□□□□□ -1.95
CUX1P39880 AL645568.3-201ENST00000433683 316 ntBASIC2.89□□□□□ -1.95
CUX1P39880 AL138799.3-201ENST00000438968 350 ntBASIC2.89□□□□□ -1.95
CUX1P39880 AC089999.1-201ENST00000460336 374 ntBASIC2.89□□□□□ -1.95
CUX1P39880 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CUX1P39880 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.89□□□□□ -1.95
CUX1P39880 AP001148.1-201ENST00000624124 2359 ntBASIC2.89□□□□□ -1.95
CUX1P39880 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.88□□□□□ -1.95
CUX1P39880 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 217.5 ms