Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ARL2BPP6-201ENST00000512757 439 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXC9P31274 RNU1-143P-201ENST00000516296 146 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXC9P31274 AC092470.1-201ENST00000546187 132 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC002400.1-201ENST00000569310 726 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC141257.3-201ENST00000572906 215 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 LARP7P2-201ENST00000575306 125 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 MIR3162-201ENST00000581818 82 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC025588.3-201ENST00000604182 274 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC112220.3-201ENST00000605502 502 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 U1.23-201ENST00000610293 146 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC243773.3-201ENST00000613270 256 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 RNU1-68P-201ENST00000615382 146 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 U1.39-201ENST00000621562 146 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 AC231657.1-201ENST00000624313 397 ntBASIC4.02□□□□□ -1.77
HOXC9P31274 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXC9P31274 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
HOXC9P31274 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
HOXC9P31274 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXC9P31274 FAM35BP-202ENST00000497389 3337 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 SNORA18.3-201ENST00000384122 132 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 RNA5SP31-201ENST00000411144 127 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 GLRXP1-201ENST00000423261 334 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AL365396.1-201ENST00000430854 671 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC9P31274 MTCYBP3-201ENST00000445588 1137 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 TRGVB-201ENST00000453257 471 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC9P31274 RNF138P1-201ENST00000502765 546 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC9P31274 RNA5SP367-201ENST00000516557 118 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 RN7SKP234-201ENST00000517173 224 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC9P31274 AC087276.1-201ENST00000529659 480 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AL139174.1-201ENST00000531489 886 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AC011602.1-201ENST00000546484 331 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 CYCSP39-201ENST00000565821 309 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC9P31274 VN1R90P-201ENST00000595717 726 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AC007566.2-201ENST00000603642 413 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXC9P31274 AC048344.4-201ENST00000619744 527 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 AC007671.2-201ENST00000637344 619 ntBASIC4.01□□□□□ -1.77
HOXC9P31274 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
HOXC9P31274 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC9P31274 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4□□□□□ -1.77
HOXC9P31274 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC9P31274 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC9P31274 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXC9P31274 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC9P31274 SNORA51.6-201ENST00000384151 125 ntBASIC4□□□□□ -1.77
HOXC9P31274 SNORD116-8-201ENST00000384365 95 ntBASIC4□□□□□ -1.77
HOXC9P31274 RPS24P12-201ENST00000402084 394 ntBASIC4□□□□□ -1.77
HOXC9P31274 RPL30P2-201ENST00000414021 291 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4□□□□□ -1.77
HOXC9P31274 MTND4P20-201ENST00000424125 869 ntBASIC4□□□□□ -1.77
HOXC9P31274 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC9P31274 AC105272.1-201ENST00000438604 198 ntBASIC4□□□□□ -1.77
HOXC9P31274 ISCA1P2-201ENST00000438679 421 ntBASIC4□□□□□ -1.77
HOXC9P31274 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC4□□□□□ -1.77
HOXC9P31274 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC4□□□□□ -1.77
HOXC9P31274 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC4□□□□□ -1.77
HOXC9P31274 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4□□□□□ -1.77
HOXC9P31274 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 HMGN2P7-201ENST00000456186 273 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC010401.1-201ENST00000463867 348 ntBASIC4□□□□□ -1.77
HOXC9P31274 RPS15AP17-201ENST00000470598 390 ntBASIC4□□□□□ -1.77
HOXC9P31274 RN7SL20P-201ENST00000488827 297 ntBASIC4□□□□□ -1.77
HOXC9P31274 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXC9P31274 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4□□□□□ -1.77
HOXC9P31274 RPS6P4-201ENST00000494693 758 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC108078.3-201ENST00000502633 489 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC083906.5-201ENST00000503722 328 ntBASIC4□□□□□ -1.77
HOXC9P31274 RPF2P2-201ENST00000504693 896 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4□□□□□ -1.77
HOXC9P31274 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 RNU6-759P-201ENST00000516740 103 ntBASIC4□□□□□ -1.77
HOXC9P31274 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4□□□□□ -1.77
HOXC9P31274 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 OR4A45P-201ENST00000529954 901 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4□□□□□ -1.77
HOXC9P31274 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 ISCA1P3-201ENST00000577104 373 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC008088.1-201ENST00000580993 280 ntBASIC4□□□□□ -1.77
HOXC9P31274 MAGOH2P-202ENST00000584384 429 ntBASIC4□□□□□ -1.77
HOXC9P31274 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4□□□□□ -1.77
HOXC9P31274 AL009028.1-201ENST00000604895 802 ntBASIC4□□□□□ -1.77
HOXC9P31274 AP003117.2-201ENST00000606010 545 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC097065.2-201ENST00000608159 533 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC078899.5-201ENST00000612475 178 ntBASIC4□□□□□ -1.77
HOXC9P31274 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC4□□□□□ -1.77
HOXC9P31274 AK6-205ENST00000618980 483 ntTSL 2 BASIC4□□□□□ -1.77
HOXC9P31274 AC007318.2-201ENST00000620999 243 ntBASIC4□□□□□ -1.77
HOXC9P31274 U6.101-201ENST00000637707 76 ntBASIC4□□□□□ -1.77
HOXC9P31274 AC087359.1-201ENST00000508335 1740 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms