Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC5.39□□□□□ -1.55
MSX1P28360 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.39□□□□□ -1.55
MSX1P28360 SNORA25.14-201ENST00000516481 132 ntBASIC5.39□□□□□ -1.55
MSX1P28360 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC5.39□□□□□ -1.55
MSX1P28360 CBX3P4-201ENST00000538909 354 ntBASIC5.39□□□□□ -1.55
MSX1P28360 AL358913.1-201ENST00000554342 121 ntBASIC5.39□□□□□ -1.55
MSX1P28360 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.39□□□□□ -1.55
MSX1P28360 SNORD95-201ENST00000579879 68 ntBASIC5.39□□□□□ -1.55
MSX1P28360 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.39□□□□□ -1.55
MSX1P28360 RN7SL787P-201ENST00000613000 284 ntBASIC5.39□□□□□ -1.55
MSX1P28360 MIR6130-201ENST00000619419 109 ntBASIC5.39□□□□□ -1.55
MSX1P28360 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
MSX1P28360 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC5.39□□□□□ -1.55
MSX1P28360 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 AC092747.4-201ENST00000620519 1861 ntBASIC5.39□□□□□ -1.55
MSX1P28360 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.38□□□□□ -1.55
MSX1P28360 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 AP000560.1-201ENST00000624150 1937 ntBASIC5.38□□□□□ -1.55
MSX1P28360 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 AC068870.1-201ENST00000563737 2455 ntBASIC5.38□□□□□ -1.55
MSX1P28360 Z75746.1-201ENST00000440243 2080 ntBASIC5.38□□□□□ -1.55
MSX1P28360 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 RNU6-1266P-201ENST00000362794 105 ntBASIC5.38□□□□□ -1.55
MSX1P28360 RNU6-288P-201ENST00000363690 104 ntBASIC5.38□□□□□ -1.55
MSX1P28360 RNU6-708P-201ENST00000384217 107 ntBASIC5.38□□□□□ -1.55
MSX1P28360 Y_RNA.533-201ENST00000384596 114 ntBASIC5.38□□□□□ -1.55
MSX1P28360 BX510359.3-201ENST00000422168 306 ntBASIC5.38□□□□□ -1.55
MSX1P28360 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX1P28360 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 RPS26P39-201ENST00000469206 341 ntBASIC5.38□□□□□ -1.55
MSX1P28360 MTND3P25-201ENST00000509243 135 ntBASIC5.38□□□□□ -1.55
MSX1P28360 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.38□□□□□ -1.55
MSX1P28360 Y_RNA.713-201ENST00000517013 96 ntBASIC5.38□□□□□ -1.55
MSX1P28360 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX1P28360 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX1P28360 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC5.38□□□□□ -1.55
MSX1P28360 CPDP1-201ENST00000579660 283 ntBASIC5.38□□□□□ -1.55
MSX1P28360 AL355812.1-201ENST00000603215 216 ntBASIC5.38□□□□□ -1.55
MSX1P28360 MIR3976-201ENST00000606807 139 ntBASIC5.38□□□□□ -1.55
MSX1P28360 AP005431.1-201ENST00000618479 319 ntBASIC5.38□□□□□ -1.55
MSX1P28360 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
MSX1P28360 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 AL606537.1-201ENST00000607258 2011 ntBASIC5.38□□□□□ -1.55
MSX1P28360 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
MSX1P28360 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
MSX1P28360 AL359854.1-201ENST00000614203 1594 ntBASIC5.38□□□□□ -1.55
MSX1P28360 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.38□□□□□ -1.55
MSX1P28360 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX1P28360 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
MSX1P28360 ZNF299P-201ENST00000406845 1804 ntBASIC5.37□□□□□ -1.55
MSX1P28360 PARP4P2-201ENST00000446672 3326 ntBASIC5.37□□□□□ -1.55
MSX1P28360 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
MSX1P28360 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
MSX1P28360 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
MSX1P28360 RNU6-817P-201ENST00000391083 104 ntBASIC5.37□□□□□ -1.55
MSX1P28360 AL513475.1-201ENST00000406602 315 ntBASIC5.37□□□□□ -1.55
MSX1P28360 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC5.37□□□□□ -1.55
MSX1P28360 AC023141.8-201ENST00000442554 208 ntBASIC5.37□□□□□ -1.55
MSX1P28360 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.37□□□□□ -1.55
MSX1P28360 RPL29P29-201ENST00000448725 423 ntBASIC5.37□□□□□ -1.55
MSX1P28360 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
MSX1P28360 AC239809.1-201ENST00000450470 217 ntBASIC5.37□□□□□ -1.55
MSX1P28360 RN7SL72P-201ENST00000460697 269 ntBASIC5.37□□□□□ -1.55
MSX1P28360 HMGB1P25-201ENST00000468402 607 ntBASIC5.37□□□□□ -1.55
MSX1P28360 HMGN2P13-201ENST00000476476 274 ntBASIC5.37□□□□□ -1.55
MSX1P28360 OR51K1P-201ENST00000510214 950 ntBASIC5.37□□□□□ -1.55
MSX1P28360 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.37□□□□□ -1.55
MSX1P28360 ATP5LP3-201ENST00000514223 304 ntBASIC5.37□□□□□ -1.55
MSX1P28360 TRAV32-201ENST00000553993 340 ntBASIC5.37□□□□□ -1.55
MSX1P28360 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.37□□□□□ -1.55
MSX1P28360 AC123786.2-201ENST00000603459 275 ntBASIC5.37□□□□□ -1.55
MSX1P28360 MIR15A-201ENST00000607334 83 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms