Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
COL5A1P20908 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL5A1P20908 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.31□□□□□ -2.04
COL5A1P20908 RNA5SP456-201ENST00000364002 114 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL5A1P20908 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL5A1P20908 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.31□□□□□ -2.04
COL5A1P20908 RNU6-354P-201ENST00000383862 107 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 RNU6-610P-201ENST00000384264 107 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 RNU6-14P-201ENST00000384630 106 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 RNA5SP105-201ENST00000391123 113 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.31□□□□□ -2.04
COL5A1P20908 AC008173.1-201ENST00000418901 264 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.31□□□□□ -2.04
COL5A1P20908 RPL7P52-201ENST00000449200 742 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 RPL7P55-201ENST00000450522 746 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC098826.2-201ENST00000452011 651 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 TVP23BP2-201ENST00000455082 615 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.31□□□□□ -2.04
COL5A1P20908 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.31□□□□□ -2.04
COL5A1P20908 AC007536.1-201ENST00000533382 349 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC2.31□□□□□ -2.04
COL5A1P20908 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.31□□□□□ -2.04
COL5A1P20908 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.31□□□□□ -2.04
COL5A1P20908 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC2.31□□□□□ -2.04
COL5A1P20908 OR4K7P-201ENST00000580232 945 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC023043.2-201ENST00000589678 1026 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AL357094.1-201ENST00000603845 844 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC011374.2-201ENST00000607135 526 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC063944.3-201ENST00000609969 533 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 BX664608.1-201ENST00000610519 487 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 AC104237.2-201ENST00000612456 443 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL5A1P20908 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.31□□□□□ -2.04
COL5A1P20908 MIR1291-201ENST00000627649 87 ntBASIC2.31□□□□□ -2.04
COL5A1P20908 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.3□□□□□ -2.04
COL5A1P20908 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
COL5A1P20908 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC069528.2-201ENST00000624849 1991 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC008432.1-201ENST00000615912 1320 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A1P20908 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A1P20908 SNORA80E-201ENST00000384744 137 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AL024474.1-201ENST00000404655 591 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 PTP4A1P7-201ENST00000423476 514 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A1P20908 YWHAZP7-201ENST00000436906 631 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC011816.1-201ENST00000441346 546 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 HMGB1P26-201ENST00000452520 628 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.3□□□□□ -2.04
COL5A1P20908 LARP7P4-201ENST00000481075 878 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC108729.1-201ENST00000487812 947 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A1P20908 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.3□□□□□ -2.04
COL5A1P20908 AC116337.1-201ENST00000509680 687 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC026436.1-201ENST00000510537 270 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.3□□□□□ -2.04
COL5A1P20908 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC2.3□□□□□ -2.04
COL5A1P20908 AP003066.2-201ENST00000529375 555 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC2.3□□□□□ -2.04
COL5A1P20908 AL049838.1-201ENST00000563647 981 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC2.3□□□□□ -2.04
COL5A1P20908 MIR4781-201ENST00000585250 76 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC2.3□□□□□ -2.04
COL5A1P20908 AC009318.2-201ENST00000610917 651 ntBASIC2.3□□□□□ -2.04
COL5A1P20908 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.3□□□□□ -2.04
COL5A1P20908 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A1P20908 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
COL5A1P20908 ZNF355P-201ENST00000427301 3216 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL5A1P20908 SNORA41-201ENST00000384675 132 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 MIR122-201ENST00000385044 85 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AC093084.1-201ENST00000424233 687 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 SAR1AP4-201ENST00000429225 591 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.29□□□□□ -2.04
COL5A1P20908 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC2.29□□□□□ -2.04
COL5A1P20908 RPL36AP33-201ENST00000450395 310 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AC091179.1-201ENST00000461606 579 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 RPL5P13-201ENST00000462840 709 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 RPL23AP70-201ENST00000483361 460 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 SUMO1P1-201ENST00000497904 306 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AC096571.1-202ENST00000506634 735 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AC093770.1-201ENST00000511559 571 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.29□□□□□ -2.04
COL5A1P20908 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.29□□□□□ -2.04
COL5A1P20908 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.29□□□□□ -2.04
COL5A1P20908 AC074029.1-201ENST00000552531 1044 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.29□□□□□ -2.04
COL5A1P20908 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC2.29□□□□□ -2.04
COL5A1P20908 AL022067.1-201ENST00000602426 454 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AP002906.1-201ENST00000603405 233 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AC112220.2-201ENST00000605513 533 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.29□□□□□ -2.04
COL5A1P20908 AC078880.5-201ENST00000617845 421 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AL512427.1-201ENST00000618593 349 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 AC092159.4-201ENST00000624944 550 ntBASIC2.29□□□□□ -2.04
COL5A1P20908 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms