Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC108043.1-201ENST00000512696 574 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AL671862.1-201ENST00000515851 349 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 TRMT10BP1-201ENST00000519377 943 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC090136.1-201ENST00000520009 240 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA3O43365 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA3O43365 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA3O43365 RN7SL52P-201ENST00000584271 284 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC008521.1-201ENST00000587471 187 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC4.1□□□□□ -1.75
HOXA3O43365 LLPHP1-201ENST00000603571 367 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC105254.2-201ENST00000603636 436 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA3O43365 RN7SL722P-201ENST00000617780 284 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 RN7SL565P-201ENST00000618246 284 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC007546.1-201ENST00000619452 559 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AC110801.1-201ENST00000623590 212 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 AL359757.2-201ENST00000624309 274 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 BTBD10P1-201ENST00000549824 1352 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 AC116667.1-201ENST00000604855 2072 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 AC090229.1-201ENST00000590983 1609 ntBASIC4.1□□□□□ -1.75
HOXA3O43365 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA3O43365 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA3O43365 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA3O43365 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HOXA3O43365 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
HOXA3O43365 EIF2AP4-201ENST00000424793 1781 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA3O43365 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA3O43365 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA3O43365 FAM91A3P-201ENST00000456826 2544 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 SMIM11P1-201ENST00000369586 178 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 SNORD116-29-201ENST00000384516 83 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 RNU6-550P-201ENST00000391057 101 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 MIR548P-201ENST00000408336 84 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 MIR548F5-201ENST00000408421 86 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 POLHP1-201ENST00000411806 470 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC074085.1-201ENST00000413598 418 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA3O43365 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA3O43365 AC016712.1-201ENST00000431088 378 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 MRPS18BP2-201ENST00000434310 759 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA3O43365 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXA3O43365 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA3O43365 SCARNA18-201ENST00000459004 134 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 RN7SL738P-201ENST00000470264 297 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA3O43365 AC012181.1-201ENST00000479895 423 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC010350.1-201ENST00000504908 231 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC098591.2-201ENST00000510152 315 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA3O43365 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA3O43365 RNU6-1095P-201ENST00000516148 108 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AP000889.2-201ENST00000532684 490 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA3O43365 OR11H5P-201ENST00000554039 926 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AL121576.1-201ENST00000556055 276 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA3O43365 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXA3O43365 MIR3936-201ENST00000584304 110 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AF038458.1-201ENST00000588406 262 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC092747.3-201ENST00000603769 301 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AC011626.1-201ENST00000604710 562 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AL122125.1-201ENST00000616999 600 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 MIR6130-201ENST00000619419 109 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 AL589994.2-201ENST00000621124 579 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.09□□□□□ -1.75
HOXA3O43365 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA3O43365 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.09□□□□□ -1.76
HOXA3O43365 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HOXA3O43365 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.09□□□□□ -1.76
HOXA3O43365 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA3O43365 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA3O43365 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA3O43365 MAPK10-263ENST00000641052 4307 ntBASIC4.09□□□□□ -1.76
HOXA3O43365 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.09□□□□□ -1.76
HOXA3O43365 THAP12P5-201ENST00000405864 2275 ntBASIC4.09□□□□□ -1.76
HOXA3O43365 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA3O43365 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.76
HOXA3O43365 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA3O43365 AC103710.2-202ENST00000641454 2853 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXA3O43365 MIR369-201ENST00000362155 70 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RNA5SP223-201ENST00000365174 120 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms