Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 HYDIN-206ENST00000393567 15719 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
MSH5O43196 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
MSH5O43196 UAP1-203ENST00000367925 2069 ntAPPRIS ALT1 TSL 5 BASIC9.4□□□□□ -0.9
MSH5O43196 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
MSH5O43196 RNU6-454P-201ENST00000364292 107 ntBASIC9.4□□□□□ -0.9
MSH5O43196 NDUFB4P4-201ENST00000404822 243 ntBASIC9.4□□□□□ -0.9
MSH5O43196 ATP6V0E1P4-201ENST00000427294 242 ntBASIC9.4□□□□□ -0.9
MSH5O43196 AL627311.1-201ENST00000431514 115 ntBASIC9.4□□□□□ -0.9
MSH5O43196 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC9.4□□□□□ -0.9
MSH5O43196 AF228730.3-201ENST00000436691 102 ntBASIC9.4□□□□□ -0.9
MSH5O43196 KNOP1P3-201ENST00000446933 426 ntBASIC9.4□□□□□ -0.9
MSH5O43196 RN7SL153P-201ENST00000486501 292 ntBASIC9.4□□□□□ -0.9
MSH5O43196 RN7SKP233-201ENST00000517005 110 ntBASIC9.4□□□□□ -0.9
MSH5O43196 PYM1-205ENST00000547925 499 ntTSL 3 BASIC9.4□□□□□ -0.9
MSH5O43196 MIR4428-201ENST00000584884 73 ntBASIC9.4□□□□□ -0.9
MSH5O43196 AC016629.2-201ENST00000597341 199 ntBASIC9.4□□□□□ -0.9
MSH5O43196 IPO5P1-202ENST00000600039 287 ntBASIC9.4□□□□□ -0.9
MSH5O43196 MIR6823-201ENST00000622118 61 ntBASIC9.4□□□□□ -0.9
MSH5O43196 ARPP21-201ENST00000187397 3433 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
MSH5O43196 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC9.4□□□□□ -0.9
MSH5O43196 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC9.4□□□□□ -0.91
MSH5O43196 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
MSH5O43196 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC9.4□□□□□ -0.91
MSH5O43196 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.91
MSH5O43196 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC9.4□□□□□ -0.91
MSH5O43196 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
MSH5O43196 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
MSH5O43196 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC9.39□□□□□ -0.91
MSH5O43196 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 AC011504.1-201ENST00000623331 4103 ntBASIC9.39□□□□□ -0.91
MSH5O43196 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC9.39□□□□□ -0.91
MSH5O43196 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 AC125336.1-201ENST00000508893 2827 ntBASIC9.39□□□□□ -0.91
MSH5O43196 HSP90AA2P-201ENST00000530115 2196 ntBASIC9.39□□□□□ -0.91
MSH5O43196 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 Y_RNA.316-201ENST00000365118 111 ntBASIC9.39□□□□□ -0.91
MSH5O43196 RNU6-484P-201ENST00000384016 107 ntBASIC9.39□□□□□ -0.91
MSH5O43196 MIR1265-201ENST00000408444 86 ntBASIC9.39□□□□□ -0.91
MSH5O43196 MIR1282-201ENST00000408865 101 ntBASIC9.39□□□□□ -0.91
MSH5O43196 RNA5SP280-201ENST00000411230 115 ntBASIC9.39□□□□□ -0.91
MSH5O43196 AC245028.1-201ENST00000423259 256 ntBASIC9.39□□□□□ -0.91
MSH5O43196 AC009414.1-201ENST00000427200 443 ntBASIC9.39□□□□□ -0.91
MSH5O43196 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 AC011276.1-201ENST00000469688 323 ntBASIC9.39□□□□□ -0.91
MSH5O43196 AC004223.1-201ENST00000479840 271 ntBASIC9.39□□□□□ -0.91
MSH5O43196 AC114728.1-201ENST00000488289 483 ntBASIC9.39□□□□□ -0.91
MSH5O43196 RN7SL143P-201ENST00000496780 297 ntBASIC9.39□□□□□ -0.91
MSH5O43196 SNORA18.4-201ENST00000516440 124 ntBASIC9.39□□□□□ -0.91
MSH5O43196 RNU6-840P-201ENST00000517275 65 ntBASIC9.39□□□□□ -0.91
MSH5O43196 CARSP2-201ENST00000520688 277 ntBASIC9.39□□□□□ -0.91
MSH5O43196 SNORA43.5-201ENST00000631270 138 ntBASIC9.39□□□□□ -0.91
MSH5O43196 AC012213.2-201ENST00000562917 4597 ntBASIC9.39□□□□□ -0.91
MSH5O43196 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC9.39□□□□□ -0.91
MSH5O43196 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 MYO6-202ENST00000369977 5597 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
MSH5O43196 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 MBD5-201ENST00000404807 5920 ntTSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
MSH5O43196 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 CNOT7-201ENST00000361272 6913 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
MSH5O43196 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
MSH5O43196 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC9.38□□□□□ -0.91
MSH5O43196 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
MSH5O43196 Y_RNA.198-201ENST00000364013 98 ntBASIC9.38□□□□□ -0.91
MSH5O43196 MIR99A-201ENST00000384906 81 ntBASIC9.38□□□□□ -0.91
MSH5O43196 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC9.38□□□□□ -0.91
MSH5O43196 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC9.38□□□□□ -0.91
MSH5O43196 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 UQCRHP4-201ENST00000471686 272 ntBASIC9.38□□□□□ -0.91
MSH5O43196 AC012158.1-204ENST00000483430 465 ntBASIC9.38□□□□□ -0.91
MSH5O43196 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC9.38□□□□□ -0.91
MSH5O43196 AC097462.1-201ENST00000514125 324 ntBASIC9.38□□□□□ -0.91
MSH5O43196 RNU6-539P-201ENST00000516665 103 ntBASIC9.38□□□□□ -0.91
MSH5O43196 AP001803.1-201ENST00000525668 147 ntBASIC9.38□□□□□ -0.91
MSH5O43196 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC9.38□□□□□ -0.91
MSH5O43196 RBM4-213ENST00000578778 582 ntTSL 4 BASIC9.38□□□□□ -0.91
MSH5O43196 AC011921.2-201ENST00000589465 152 ntBASIC9.38□□□□□ -0.91
MSH5O43196 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC9.38□□□□□ -0.91
MSH5O43196 MIR6861-201ENST00000618657 64 ntBASIC9.38□□□□□ -0.91
MSH5O43196 AC016907.2-203ENST00000455424 3563 ntTSL 3 BASIC9.38□□□□□ -0.91
MSH5O43196 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
MSH5O43196 KIAA1524-207ENST00000619684 2839 ntAPPRIS ALT1 TSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC9.38□□□□□ -0.91
MSH5O43196 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
MSH5O43196 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
MSH5O43196 INTS4-209ENST00000534064 3156 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
MSH5O43196 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
MSH5O43196 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC9.37□□□□□ -0.91
MSH5O43196 FGF9-201ENST00000382353 4220 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
MSH5O43196 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC9.37□□□□□ -0.91
MSH5O43196 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
MSH5O43196 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC9.37□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 174.7 ms