Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PNPT1P2-201ENST00000456768 2050 ntBASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.46□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NAMPTP1-201ENST00000440465 2514 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC139426.3-201ENST00000605648 2059 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU1-94P-201ENST00000362627 173 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-251P-201ENST00000363235 104 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 Y_RNA.153-201ENST00000363615 91 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-522P-201ENST00000364497 107 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SOD2P1-201ENST00000396543 562 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPL35AP21-201ENST00000437667 333 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 TRAPPC2P3-201ENST00000443200 321 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 HMGB1P15-201ENST00000453854 435 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RN7SL441P-201ENST00000492388 296 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPL22P13-201ENST00000493291 347 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-273P-201ENST00000516937 96 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SUMO2P20-201ENST00000520803 283 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC022882.1-201ENST00000532142 501 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC090502.2-201ENST00000549267 280 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MIR3942-201ENST00000585264 109 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC020910.3-201ENST00000603701 874 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC090525.3-201ENST00000605601 189 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC007996.1-201ENST00000620414 2821 ntBASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SNORA71.3-201ENST00000362582 128 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 Y_RNA.252-201ENST00000364556 101 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-38P-201ENST00000384085 107 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MIR298-201ENST00000401212 88 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MTCO2P33-201ENST00000402100 465 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RN7SKP202-201ENST00000410439 330 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPL6P29-201ENST00000414863 865 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL645608.4-201ENST00000423619 154 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC007283.2-201ENST00000424739 197 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 OR2AH1P-201ENST00000425717 928 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL732292.1-201ENST00000426692 226 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC006548.1-201ENST00000427470 102 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL359265.2-201ENST00000434367 631 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-333P-201ENST00000459117 107 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC092451.1-201ENST00000480211 153 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC034222.1-201ENST00000494052 532 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LIAS-206ENST00000513731 826 ntTSL 5 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-566P-201ENST00000516790 107 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-1088P-201ENST00000516850 104 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC008083.2-201ENST00000546707 476 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AF038458.1-201ENST00000588406 262 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC141273.2-201ENST00000618989 130 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC243312.2-201ENST00000623340 601 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC126323.6-202ENST00000568092 3511 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC022893.2-201ENST00000564832 3296 ntBASIC6.44□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC008758.3-201ENST00000507003 1829 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SMG1P4-204ENST00000523028 4131 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL731566.1-201ENST00000620490 1937 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SNORA9-201ENST00000384215 133 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 Y_RNA.482-201ENST00000384377 111 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL139397.2-201ENST00000404529 772 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 U3.35-201ENST00000408405 208 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC078974.1-201ENST00000411597 223 ntBASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms