Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AL353796.1-201ENST00000561542 3241 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 EIF2AP4-201ENST00000424793 1781 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 Y_RNA.518-201ENST00000384552 113 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 Y_RNA.551-201ENST00000384661 102 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AP000580.1-201ENST00000404439 358 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AL138885.1-201ENST00000405921 675 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 RBMY1KP-201ENST00000423480 476 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC139712.2-201ENST00000424302 339 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC108075.1-201ENST00000424692 529 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC010631.1-201ENST00000474150 156 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 RN7SL727P-201ENST00000482164 296 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 Y_RNA.700-201ENST00000516806 100 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC018552.1-201ENST00000562099 811 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 MTND4LP5-201ENST00000605152 292 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 AC244107.2-201ENST00000611773 76 ntBASIC5.63□□□□□ -1.51
USP3Q9Y6I4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
USP3Q9Y6I4 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AL034549.2-201ENST00000618285 3373 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 SNORA67-201ENST00000384423 137 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 MIR517A-201ENST00000385001 87 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AC005522.1-201ENST00000395416 346 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 RPS23P10-201ENST00000416185 486 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 RPL21P2-201ENST00000440049 481 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 DAP3P1-201ENST00000441522 278 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 RN7SL172P-201ENST00000460535 303 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AC010683.1-201ENST00000473673 378 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 RN7SL30P-201ENST00000488416 306 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AL137100.2-201ENST00000555786 315 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 MIR3128-201ENST00000581957 66 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 MIR7853-201ENST00000584820 132 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AC069307.1-201ENST00000602820 447 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AC011626.1-201ENST00000604710 562 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 U2.22-201ENST00000636441 106 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 SOCS5P3-201ENST00000425115 1576 ntBASIC5.62□□□□□ -1.51
USP3Q9Y6I4 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
USP3Q9Y6I4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RNU1-146P-201ENST00000364015 165 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RNU1-74P-201ENST00000384108 171 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RNU6-45P-201ENST00000384471 107 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RNU6-821P-201ENST00000390995 107 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 RPS4XP7-201ENST00000406274 780 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 GPS2P1-201ENST00000411761 986 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.61□□□□□ -1.51
USP3Q9Y6I4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms