Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC010342.1-201ENST00000514047 877 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 RN7SKP92-201ENST00000517266 244 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 IGLVIV-65-201ENST00000517313 360 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AC234778.2-201ENST00000566241 354 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AC068790.5-201ENST00000602741 355 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AC245517.5-201ENST00000611529 162 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 FAM27D1-201ENST00000612308 341 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AP005264.7-201ENST00000625003 745 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 LRRC77P-213ENST00000637727 880 ntBASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.38□□□□□ -1.71
PCDHA3Q9Y5H8 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AL158163.1-201ENST00000603915 1649 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RNY4P14-201ENST00000363656 96 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-169P-201ENST00000365336 107 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 SNORA56-201ENST00000383966 129 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RNU6-398P-201ENST00000384143 109 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 Y_RNA.450-201ENST00000384198 113 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RNU11-4P-201ENST00000391149 133 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RPL23AP48-201ENST00000406913 488 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 SNORA3C-201ENST00000408792 125 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RNU2-62P-201ENST00000410868 191 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 OR1AA1P-201ENST00000419597 916 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 MTND4LP11-201ENST00000422184 280 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC016712.1-201ENST00000431088 378 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RPL21P89-201ENST00000444021 467 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC108059.3-201ENST00000456388 214 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RNU7-59P-201ENST00000459101 61 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 FTH1P21-201ENST00000512179 511 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RNA5SP337-201ENST00000517007 109 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 IGKV2-38-201ENST00000517443 247 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 OR5AQ1P-201ENST00000527596 927 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 OR4T1P-201ENST00000554933 911 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC068831.4-201ENST00000556118 109 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 HMGB1P33-201ENST00000563485 527 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC006254.3-201ENST00000603353 884 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AL391646.1-201ENST00000603860 190 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC007038.2-201ENST00000608095 740 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC006065.5-201ENST00000623427 349 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 AC244258.1-201ENST00000637553 1071 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.37□□□□□ -1.71
PCDHA3Q9Y5H8 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 AC007390.2-201ENST00000606229 3803 ntBASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
PCDHA3Q9Y5H8 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 137.8 ms