Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC087883.1-201ENST00000551882 391 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC007424.1-203ENST00000554613 687 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 RPL23AP87-202ENST00000573039 466 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC068790.6-201ENST00000602558 258 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 SNHG22-203ENST00000617833 660 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC032011.1-201ENST00000611703 1549 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 U3.11-201ENST00000364476 212 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 Y_RNA.296-201ENST00000364930 108 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 EIF1P3-201ENST00000423841 334 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AL358934.1-201ENST00000432346 324 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 MTCYBP1-201ENST00000454315 1119 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC104164.2-201ENST00000496953 495 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC105252.1-201ENST00000503089 286 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 MTND2P33-201ENST00000506452 1031 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 RNU6-720P-201ENST00000516363 108 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 RNA5SP468-201ENST00000516782 93 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 RN7SKP289-201ENST00000517244 295 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC100870.1-201ENST00000522035 505 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC040958.1-201ENST00000561102 201 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC105224.1-201ENST00000587055 421 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC068790.5-201ENST00000602741 355 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC068880.5-201ENST00000624331 290 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC048347.1-201ENST00000624621 427 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 MTND5P29-201ENST00000458676 1807 ntBASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC9Q9Y3X0 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AL590704.1-201ENST00000402856 794 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC104651.1-201ENST00000427559 735 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 USP12PX-201ENST00000432383 1057 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 ATP5C1P1-201ENST00000441945 895 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 RPS3AP12-201ENST00000443616 753 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC016696.1-201ENST00000446949 318 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 HSPE1P6-201ENST00000479457 291 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC010493.1-201ENST00000513479 292 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 RNU2-10P-201ENST00000516375 211 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 RNA5SP49-201ENST00000516450 115 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC128657.1-201ENST00000549459 145 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 MIR4660-201ENST00000583549 74 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC138649.3-201ENST00000622154 254 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 FRG1KP-201ENST00000623592 341 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC012442.3-202ENST00000636742 206 ntBASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC9Q9Y3X0 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AC007685.1-201ENST00000329806 452 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 ARL4AP5-201ENST00000404372 599 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AP000580.1-201ENST00000404439 358 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 RPL23AP48-201ENST00000406913 488 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 RNU2-37P-201ENST00000410695 177 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 MTND3P17-201ENST00000416968 344 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 RGS17P1-201ENST00000423358 553 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AC133104.1-201ENST00000429100 218 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 BTF3P10-201ENST00000433415 495 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AL662791.1-201ENST00000441992 928 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 RPS4XP13-201ENST00000483219 789 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms