Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 SGO1P2-201ENST00000429458 1589 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 OR1S2-201ENST00000302592 978 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RPL7P26-201ENST00000333817 754 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RNU6-621P-201ENST00000364752 109 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RNU6-328P-201ENST00000390887 106 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AL031679.1-201ENST00000400616 525 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AL356131.1-201ENST00000405826 414 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RNU4-65P-201ENST00000410473 140 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC007899.1-201ENST00000412776 775 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AL137014.1-201ENST00000420490 1226 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 MTND2P9-201ENST00000422293 931 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 MTCO2P5-201ENST00000422621 426 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RPL23AP69-201ENST00000431134 458 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC108734.1-201ENST00000439549 399 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RPS3AP12-201ENST00000443616 753 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 PTENP1-201ENST00000447117 1215 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RPL23AP31-201ENST00000456160 467 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 NAA50-206ENST00000493454 964 ntTSL 2 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 RNU1-61P-201ENST00000516107 151 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 SNORA70.24-201ENST00000517233 118 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 CR383656.7-201ENST00000548164 174 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 MIR3200-201ENST00000580767 85 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 VIS1.1-201ENST00000610517 203 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AL353748.2-201ENST00000622148 471 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 AC116618.1-201ENST00000634617 774 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 CRYM-AS1-204ENST00000637983 556 ntBASIC3.18□□□□□ -1.9
LHX3Q9UBR4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.18□□□□□ -1.9
LHX3Q9UBR4 MTND5P24-201ENST00000438892 1767 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 RPL23AP57-201ENST00000332361 466 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 OR5H2-201ENST00000355273 945 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 RNU6-1155P-201ENST00000363554 107 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 MIR491-201ENST00000384877 84 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 RNA5SP107-201ENST00000411358 122 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 RPS7P13-201ENST00000413955 498 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 MTCO1P39-201ENST00000426148 480 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 RABEPKP1-201ENST00000440529 1026 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 ARPC3P5-201ENST00000448802 534 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AL353691.1-201ENST00000451332 387 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC097493.1-201ENST00000463958 372 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 RPS3AP43-201ENST00000479743 781 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 RPS4XP22-201ENST00000480755 780 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC093278.1-201ENST00000494700 600 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC105914.1-201ENST00000511798 226 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC009712.1-201ENST00000564938 316 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AP001029.3-201ENST00000588063 596 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AC095031.1-201ENST00000623685 672 ntBASIC3.17□□□□□ -1.9
LHX3Q9UBR4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LHX3Q9UBR4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms