Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 FTH1P21-201ENST00000512179 511 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 RNU6-798P-201ENST00000516912 103 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC109635.3-201ENST00000529536 185 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AL512310.1-201ENST00000548639 172 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 OR4T1P-201ENST00000554933 911 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 COX6CP3-201ENST00000580869 223 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC007038.2-201ENST00000608095 740 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AP001596.2-201ENST00000608410 312 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC007546.1-201ENST00000619452 559 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 NMD3P1-201ENST00000439704 1488 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 AC139713.2-215ENST00000641428 5037 ntBASIC4.43□□□□□ -1.7
TDP1Q9NUW8 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
TDP1Q9NUW8 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC138915.3-201ENST00000562908 1389 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNY1P12-201ENST00000364251 105 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNY3P13-201ENST00000365542 102 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNA5SP283-201ENST00000365604 119 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNU6-456P-201ENST00000384493 107 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 MIR134-201ENST00000385258 73 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNU11-4P-201ENST00000391149 133 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 USP9YP27-201ENST00000418455 438 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AL117339.2-201ENST00000430475 180 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 HMGB1P31-201ENST00000437242 427 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 VN1R34P-201ENST00000447387 883 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 UBDP1-202ENST00000457888 382 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 snoU13.3-201ENST00000459441 104 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC069439.1-201ENST00000494739 167 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC118273.2-201ENST00000532092 465 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 CR383656.7-201ENST00000548164 174 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RPL23AP97-201ENST00000568955 471 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 BNIP3P33-201ENST00000598912 569 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RPL7P50-201ENST00000600588 727 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 RNF138P2-201ENST00000603490 592 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC112230.1-201ENST00000604342 547 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC115621.1-201ENST00000604653 858 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AP001330.5-201ENST00000607176 411 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC004067.1-201ENST00000608733 700 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC245517.5-201ENST00000611529 162 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC002553.4-201ENST00000616896 331 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 LINC00901.1-201ENST00000617252 152 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC006338.1-201ENST00000618453 749 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AL008636.1-201ENST00000625038 1018 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 MIR1321-201ENST00000637766 79 ntBASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
TDP1Q9NUW8 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 OR1S2-201ENST00000302592 978 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RNU1-20P-201ENST00000363314 162 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RNU6-1078P-201ENST00000364522 103 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 Y_RNA.303-201ENST00000364998 94 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RNU6-483P-201ENST00000384088 108 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RNU6-356P-201ENST00000384140 107 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 RNU1-44P-201ENST00000384453 163 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC009237.10-201ENST00000414112 510 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 MTATP6P18-201ENST00000417994 673 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
TDP1Q9NUW8 NANOGP10-201ENST00000453325 895 ntBASIC4.41□□□□□ -1.7
TDP1Q9NUW8 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms