Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC139783.2-201ENST00000504847 1145 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC091868.1-201ENST00000508746 304 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 RNA5SP503-201ENST00000517047 117 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 CYCSP40-201ENST00000575927 294 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 RN7SL52P-201ENST00000584271 284 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC012443.1-201ENST00000605605 231 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC008945.2-201ENST00000606056 604 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 AC015914.2-201ENST00000618167 288 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 MIR6853-201ENST00000619642 74 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 OR51H2P-202ENST00000641424 3046 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 OR14L1P-202ENST00000641545 3009 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 RIOK3P1-201ENST00000418778 1528 ntBASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.71□□□□□ -1.66
TRIM39Q9HCM9 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 U3.15-201ENST00000365398 212 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC093019.1-201ENST00000443135 252 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC073415.1-201ENST00000449240 153 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC079804.1-201ENST00000461922 436 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC010486.1-201ENST00000511793 424 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 RNA5SP360-201ENST00000516555 118 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 CDH12P4-201ENST00000517835 295 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 CDH12P3-201ENST00000517935 295 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 CDH12P1-201ENST00000518435 295 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 OR5AL2P-201ENST00000532185 920 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC093012.1-202ENST00000549403 582 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC125611.2-201ENST00000551907 647 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC018638.8-201ENST00000588755 281 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AL161616.1-201ENST00000611867 286 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AL450472.3-201ENST00000615578 367 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC233309.1-201ENST00000619522 751 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC055839.1-201ENST00000634467 498 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 BDP1P-201ENST00000582658 1990 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 API5-210ENST00000534600 1760 ntTSL 5 BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 AL645937.1-201ENST00000641739 1652 ntBASIC4.7□□□□□ -1.66
TRIM39Q9HCM9 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 AC012618.3-205ENST00000637896 1496 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 OR4G1P-203ENST00000641984 1631 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 RPL7P26-201ENST00000333817 754 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 RNVU1-6-201ENST00000364688 164 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 RNU1-82P-201ENST00000390851 165 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 RNU2-29P-201ENST00000410423 189 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 RNU6-387P-201ENST00000411331 105 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 AL591848.1-201ENST00000413092 322 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 AL161631.1-201ENST00000417933 486 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 EIF4HP2-201ENST00000424380 563 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 AL359265.2-201ENST00000434367 631 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 AC004938.1-201ENST00000438468 308 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 CBWD4P-201ENST00000445695 655 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 RPS29P15-201ENST00000458329 171 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 SNORD108-201ENST00000459332 71 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 IGLV2-34-201ENST00000490007 283 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 EIF4EP3-201ENST00000498782 656 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 HMGN1P12-201ENST00000499125 195 ntBASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
TRIM39Q9HCM9 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 337.7 ms