Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 AC008568.2-201ENST00000623862 2313 ntBASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.7□□□□□ -1.5
TRAIPQ9BWF2 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 ANKRD26P2-201ENST00000445530 1710 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 RNA5SP90-201ENST00000364801 99 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 RNU6-14P-201ENST00000384630 106 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 SNORA48.4-201ENST00000391089 134 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 Y_RNA.615-201ENST00000410769 117 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AC092809.3-201ENST00000415453 231 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 BX842559.1-201ENST00000419615 532 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 RPL7AP49-201ENST00000429522 581 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AL591438.1-201ENST00000433508 581 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AF228730.2-201ENST00000438784 848 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 SNRPGP5-201ENST00000456003 220 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AC087241.2-201ENST00000535801 324 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 MIR4424-201ENST00000585257 86 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 Z82243.1-201ENST00000609432 473 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 Mico1.1-201ENST00000611698 204 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 MAPK10-349ENST00000641767 3661 ntBASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TRAIPQ9BWF2 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AL138820.1-201ENST00000617901 5305 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 MTND4P29-201ENST00000503122 1372 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 INTS6P1-201ENST00000504674 2530 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 UBE2L2-201ENST00000254302 429 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 Y_RNA.142-201ENST00000363491 102 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 RNU6-82P-201ENST00000363970 107 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 RPL35AP28-201ENST00000459730 331 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 Y_RNA.654-201ENST00000497848 106 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 RNU6-1314P-201ENST00000517139 104 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AC108738.1-201ENST00000603703 237 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AC009248.2-201ENST00000619826 254 ntBASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
TRAIPQ9BWF2 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC063976.2-201ENST00000425667 3556 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 MIR585-201ENST00000384887 94 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 RN7SKP32-201ENST00000410167 303 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 NDUFB4P7-201ENST00000423198 363 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC021660.1-201ENST00000465006 554 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 VN1R17P-201ENST00000472048 1090 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 RPL31P60-201ENST00000478450 367 ntBASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.67□□□□□ -1.5
TRAIPQ9BWF2 MTND3P22-201ENST00000510932 243 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms