Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AP000857.1-201ENST00000532151 543 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC006116.10-201ENST00000591836 581 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AF131215.7-201ENST00000602443 707 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC068790.5-201ENST00000602741 355 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 Z99497.2-201ENST00000603634 310 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC012360.2-201ENST00000609349 391 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 TUG1_2.1-201ENST00000614234 87 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AC012150.2-201ENST00000621300 544 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 OR5BE1P-202ENST00000641168 1176 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 ZNF807-201ENST00000328088 1707 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.11□□□□□ -1.75
HERPUD2Q9BSE4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 IPO8P1-201ENST00000455509 3109 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 Z82217.1-201ENST00000625157 8149 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 RNA5SP130-201ENST00000364431 114 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AL109755.1-201ENST00000401791 649 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 FAT1P1-201ENST00000406588 507 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 MIR1193-201ENST00000408109 78 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 FTH1P1-201ENST00000437933 532 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC118469.1-201ENST00000442943 488 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AL162389.1-201ENST00000449233 177 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 U3.44-201ENST00000458938 192 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 RNU7-59P-201ENST00000459101 61 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 RPL38P1-201ENST00000460914 211 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AL672167.3-201ENST00000465951 960 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 SETP11-201ENST00000473027 690 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 MTND3P7-201ENST00000474435 343 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AL132838.2-201ENST00000492041 314 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC112204.1-201ENST00000502591 103 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 NPM1P41-201ENST00000512920 831 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC022690.1-201ENST00000526681 550 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AL121766.1-201ENST00000547436 487 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 OR4H12P-201ENST00000556269 907 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 CLIC4P2-201ENST00000601934 717 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC121247.2-201ENST00000604776 136 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 HMGB1P50-201ENST00000605814 607 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 RNU4-89P-201ENST00000607443 133 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC027807.2-201ENST00000616099 408 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AL359715.5-201ENST00000623431 443 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AC112484.5-201ENST00000624189 228 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 AL138713.1-201ENST00000624026 2130 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 CUL1P1-201ENST00000509510 2425 ntBASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HERPUD2Q9BSE4 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 SDAD1P2-201ENST00000441308 2028 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 SPRR2C-201ENST00000290702 219 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 Y_RNA.46-201ENST00000362695 102 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 RNA5SP322-201ENST00000363617 119 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 RNU6-533P-201ENST00000384144 107 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 SNORA36C-201ENST00000384289 132 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 RNU1-89P-201ENST00000384592 164 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 SNORA57.1-201ENST00000391227 145 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 RPS20P2-201ENST00000402520 389 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 TXNP7-201ENST00000406296 293 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 RN7SKP159-201ENST00000410657 292 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 TMEM167AP1-201ENST00000423409 219 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 HMGB1P37-201ENST00000439613 609 ntBASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.09□□□□□ -1.75
HERPUD2Q9BSE4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms