Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 MIR491-201ENST00000384877 84 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 RPL32P35-201ENST00000415214 394 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 HSPE1P1-201ENST00000421494 318 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 BEND7P1-201ENST00000422058 457 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AL512649.1-201ENST00000428997 581 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 MTND2P20-201ENST00000440805 661 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 TAF8-207ENST00000482432 556 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 KCTD9P5-201ENST00000504141 1170 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 MTND4LP22-201ENST00000508209 276 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC113347.3-201ENST00000509113 148 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 SNORA70.16-201ENST00000516390 95 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 RN7SKP272-201ENST00000516988 232 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC091163.3-201ENST00000518269 1144 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AP001207.2-201ENST00000519490 539 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC022861.1-201ENST00000522981 663 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 HSPA8P13-201ENST00000523715 472 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 FAM60DP-201ENST00000524174 632 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 YWHAZP1-201ENST00000556286 722 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 RPL21P12-201ENST00000559810 515 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC015688.2-201ENST00000584523 262 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC009220.3-201ENST00000604318 586 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AL591516.1-201ENST00000611326 274 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AL442067.2-201ENST00000614033 363 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC138932.5-201ENST00000617759 563 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC004808.1-201ENST00000627671 721 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 TAB3P1-202ENST00000452645 1634 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 AC097714.1-201ENST00000511272 1647 ntBASIC3.54□□□□□ -1.84
CCDC43Q96MW1 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 CUL1P1-201ENST00000509510 2425 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 MTND5P27-201ENST00000428871 1720 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC118273.1-201ENST00000525324 3006 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 SNORA48.8-201ENST00000391324 134 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 EI24P2-201ENST00000397776 1076 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 RNA5SP38-201ENST00000410750 119 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC068533.2-201ENST00000411872 306 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC006960.1-201ENST00000419980 153 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 RPL23AP83-201ENST00000434984 473 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 TRIM60P18-201ENST00000441518 828 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC140076.1-201ENST00000449897 361 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 PTGES3P5-201ENST00000455109 434 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 RNU1-143P-201ENST00000516296 146 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 SNORD59.2-201ENST00000516873 68 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC43Q96MW1 MIR5004-201ENST00000579078 107 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC013444.2-201ENST00000603317 787 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 DUXAP11-201ENST00000603858 526 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 BNIP3P11-201ENST00000603878 563 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC004853.1-201ENST00000604902 698 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 U1.23-201ENST00000610293 146 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC104763.3-201ENST00000613765 618 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 RNU1-68P-201ENST00000615382 146 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 U1.39-201ENST00000621562 146 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC092326.2-201ENST00000624772 1561 ntBASIC3.53□□□□□ -1.84
CCDC43Q96MW1 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 FAT1P1-201ENST00000406588 507 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 USP9YP36-201ENST00000424581 829 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC024082.2-201ENST00000434771 238 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 MTCYBP45-201ENST00000435243 565 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 ELOCP23-201ENST00000452014 332 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AL359385.1-201ENST00000456509 365 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC108860.1-201ENST00000484521 383 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC43Q96MW1 SNORA31.1-201ENST00000515993 133 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 RNU6-583P-201ENST00000516012 92 ntBASIC3.52□□□□□ -1.85
CCDC43Q96MW1 SNORA31.5-201ENST00000516190 133 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms