Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL161631.1-201ENST00000417933 486 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC008280.1-201ENST00000418851 412 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 FAM103A2P-201ENST00000444122 354 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 CBWD4P-201ENST00000445695 655 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 ABCF2P2-201ENST00000450549 296 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RPS27AP18-201ENST00000515536 459 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-835P-201ENST00000516974 104 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 MIR5684-201ENST00000585074 65 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AL592436.1-201ENST00000605135 558 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 BX664608.1-201ENST00000610519 487 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 DISC2.1-201ENST00000612827 205 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AL354798.1-201ENST00000622505 329 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC024940.5-201ENST00000622889 474 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC015871.5-202ENST00000623252 701 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 U6.101-201ENST00000637707 76 ntBASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
USHBP1Q8N6Y0 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 PCAT14-202ENST00000627127 3935 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 OR5J1P-201ENST00000313544 939 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-1120P-201ENST00000362988 108 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-249P-201ENST00000363016 102 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AC093578.1-201ENST00000415219 368 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AL353777.1-201ENST00000425552 326 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AL133547.1-201ENST00000448546 220 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 NIPA2P5-201ENST00000452282 464 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 MTCO3P2-201ENST00000457365 171 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-261P-201ENST00000459506 102 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AC026410.2-201ENST00000460281 156 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-714P-201ENST00000516963 103 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AC115085.1-201ENST00000588924 229 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AC243960.4-201ENST00000600532 288 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 FP236240.3-201ENST00000623061 327 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AC009161.2-201ENST00000624626 138 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 SRP54-214ENST00000630962 162 ntTSL 5 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 NUP58P1-201ENST00000502546 1738 ntBASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.43□□□□□ -1.54
USHBP1Q8N6Y0 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 ATP8A2P2-201ENST00000437678 1568 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.58-201ENST00000362807 102 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.154-201ENST00000363624 102 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 RNY3P1-201ENST00000365085 102 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 RNY3-201ENST00000365484 102 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 SNORA69-201ENST00000383895 132 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-213P-201ENST00000384051 104 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.490-201ENST00000384413 102 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 DHFRP6-201ENST00000401776 268 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AL590704.1-201ENST00000402856 794 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 MIR1179-201ENST00000408703 91 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 RAB9AP3-201ENST00000412737 573 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC048351.1-201ENST00000420064 602 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 MTCO2P5-201ENST00000422621 426 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 RPL35AP12-201ENST00000425362 338 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 MTCO2P12-201ENST00000427426 682 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AL358472.1-201ENST00000431295 329 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AL606489.2-201ENST00000433886 234 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 RAB9AP1-201ENST00000449393 573 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC104563.1-201ENST00000476147 376 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms