Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 OR4K8P-201ENST00000578842 1048 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 AC096947.1-201ENST00000603233 470 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 BNIP3P31-201ENST00000604515 566 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 AC025588.4-201ENST00000615802 908 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 AL356321.1-201ENST00000621360 228 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 AP000720.1-201ENST00000625091 483 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 AL513302.2-201ENST00000562313 1842 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 AC009487.2-201ENST00000420969 6821 ntBASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
HDDC3Q8N4P3 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 SNORA5B-201ENST00000363786 132 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 MIR135A2-201ENST00000384854 100 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 MIR184-201ENST00000384962 84 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 RNU6-1000P-201ENST00000391066 106 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 MTATP6P19-201ENST00000413797 659 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 Z75741.2-201ENST00000417272 1167 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC007742.1-201ENST00000425789 329 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 ELOCP26-201ENST00000436067 329 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 THAP5P1-201ENST00000439089 262 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC008264.1-201ENST00000447612 367 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 RPL23AP67-201ENST00000465341 474 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC104472.2-201ENST00000469035 601 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC006483.1-201ENST00000487308 313 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC114981.1-201ENST00000503897 678 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC097462.2-201ENST00000504623 481 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 HMGB1P28-201ENST00000507778 552 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 HSPA8P13-201ENST00000523715 472 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AP003102.1-201ENST00000525638 661 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC005476.1-201ENST00000554427 397 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 HIGD1AP17-201ENST00000554576 276 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC015917.1-201ENST00000579654 510 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 DNAJC19P3-201ENST00000594491 331 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AL451074.6-201ENST00000608512 729 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC024257.5-201ENST00000612739 531 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC253576.2-201ENST00000618815 580 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AC109315.1-201ENST00000584143 1347 ntBASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.34□□□□□ -1.87
HDDC3Q8N4P3 AL356473.1-201ENST00000406203 1408 ntBASIC3.34□□□□□ -1.88
HDDC3Q8N4P3 RIOK3P1-201ENST00000418778 1528 ntBASIC3.34□□□□□ -1.88
HDDC3Q8N4P3 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
HDDC3Q8N4P3 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 SNORA80A-201ENST00000363922 136 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 SNORA14A-201ENST00000364773 135 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 UBE2V1P2-201ENST00000397758 440 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 RN7SKP285-201ENST00000410137 318 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC126124.2-201ENST00000413542 321 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 TRIM60P18-201ENST00000441518 828 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 HMGB3P6-201ENST00000444896 598 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AL359385.1-201ENST00000456509 365 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 RPL23AP14-201ENST00000468281 468 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 ACTG1P13-201ENST00000486987 1043 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC111000.2-201ENST00000507775 550 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC113420.1-201ENST00000507903 571 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 RNU6-276P-201ENST00000516114 96 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 HIGD1AP1-201ENST00000550979 275 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC005951.1-201ENST00000576706 485 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC004853.1-201ENST00000604902 698 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AL365503.1-201ENST00000605247 905 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 AC116312.1-201ENST00000606841 314 ntBASIC3.33□□□□□ -1.88
HDDC3Q8N4P3 OR2AS2P-201ENST00000606902 342 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms