Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 RN7SKP269-201ENST00000365545 319 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 SET-203ENST00000372688 801 ntTSL 2 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 Y_RNA.428-201ENST00000384078 102 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 SNORA16.2-201ENST00000390991 127 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 NDUFS5P1-201ENST00000405668 289 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 RNU6-293P-201ENST00000411259 106 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 USMG5P1-201ENST00000425964 177 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AL353597.2-202ENST00000434901 373 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AL162389.1-201ENST00000449233 177 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 Z92846.1-201ENST00000456203 268 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 RPS26P39-201ENST00000469206 341 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 COPS8P2-201ENST00000473228 627 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 RBBP4P6-201ENST00000508098 202 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 CR383656.7-201ENST00000548164 174 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 DYNLL1P4-201ENST00000549314 266 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC040958.1-201ENST00000561102 201 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 OR1F2P-201ENST00000570470 933 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC005899.2-201ENST00000584353 90 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC073539.2-201ENST00000597113 165 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AL031320.1-201ENST00000604177 357 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AL031176.1-201ENST00000604554 466 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 NUTF2P8-201ENST00000604593 363 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 ATP1B3P1-201ENST00000605365 821 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AL121612.2-201ENST00000612261 482 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 DUSP12P1-201ENST00000612874 516 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 TUG1_2.1-201ENST00000614234 87 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC118658.2-201ENST00000618697 459 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC027228.2-201ENST00000567141 2154 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC005592.1-201ENST00000566527 1640 ntBASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
UBE3DQ7Z6J8 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AL158163.1-201ENST00000603915 1649 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 SMIM11P1-201ENST00000369586 178 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 RNU11-4P-201ENST00000391149 133 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 CYB5AP4-201ENST00000396692 399 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AL445189.1-201ENST00000405722 338 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 Y_RNA.594-201ENST00000410373 140 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 COX5BP7-201ENST00000414780 274 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 UBE2FP1-201ENST00000416536 447 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC236972.1-201ENST00000433225 199 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC234775.1-201ENST00000454247 670 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC245028.2-201ENST00000458673 253 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 SNORD5.1-201ENST00000458800 75 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 RPL7P23-201ENST00000493874 747 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 RNU2-69P-201ENST00000516061 100 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 SNORD116.3-201ENST00000517176 78 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC012400.1-201ENST00000518452 381 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC090151.1-201ENST00000520784 730 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC063949.1-201ENST00000552900 865 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 PRPF19P1-201ENST00000584766 898 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC104687.2-201ENST00000604442 342 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AL359547.2-201ENST00000615810 418 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 AC110801.1-201ENST00000623590 212 ntBASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
UBE3DQ7Z6J8 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
UBE3DQ7Z6J8 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
UBE3DQ7Z6J8 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
UBE3DQ7Z6J8 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
UBE3DQ7Z6J8 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
UBE3DQ7Z6J8 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 200.1 ms