Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 EIF1P1-201ENST00000421436 341 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 PDSS1P1-201ENST00000422953 1114 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.2□□□□□ -1.58
SF3A1Q15459 RPL21P133-201ENST00000443666 476 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AC079781.2-201ENST00000446424 169 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 Z99127.3-201ENST00000448158 395 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.2□□□□□ -1.58
SF3A1Q15459 SNRPGP5-201ENST00000456003 220 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 SNORD97-201ENST00000459187 142 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AC092324.1-201ENST00000468671 324 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC5.2□□□□□ -1.58
SF3A1Q15459 RPL35P6-201ENST00000490024 372 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AF213884.2-201ENST00000510417 903 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AC105914.1-201ENST00000511798 226 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AC100870.1-201ENST00000522035 505 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.2□□□□□ -1.58
SF3A1Q15459 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AC093012.1-202ENST00000549403 582 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SF3A1Q15459 MED28P6-201ENST00000558776 231 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.2□□□□□ -1.58
SF3A1Q15459 AC006116.10-201ENST00000591836 581 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AC012507.3-201ENST00000603556 477 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AL391646.1-201ENST00000603860 190 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AP002360.3-201ENST00000607673 710 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AL355810.1-201ENST00000614629 552 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 SDR42E1P2-201ENST00000614861 481 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 RN7SL722P-201ENST00000617780 284 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 RN7SL565P-201ENST00000618246 284 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 Xist_exon1.1-201ENST00000618930 85 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SF3A1Q15459 MIR6810-201ENST00000622701 70 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 ANKRD36BP1-202ENST00000604892 1417 ntBASIC5.2□□□□□ -1.58
SF3A1Q15459 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.2□□□□□ -1.58
SF3A1Q15459 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SF3A1Q15459 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.2□□□□□ -1.58
SF3A1Q15459 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.2□□□□□ -1.58
SF3A1Q15459 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SF3A1Q15459 GABPAP-201ENST00000419271 1356 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 USP8P1-201ENST00000494673 3183 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SF3A1Q15459 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SF3A1Q15459 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SF3A1Q15459 OR4G2P-201ENST00000328113 903 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 RNU1-94P-201ENST00000362627 173 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 RNU6-1097P-201ENST00000363586 107 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 RNU6-108P-201ENST00000365558 107 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 Y_RNA.372-201ENST00000365599 102 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 RNU1-63P-201ENST00000383902 164 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 Y_RNA.554-201ENST00000384672 102 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SF3A1Q15459 AL359634.1-202ENST00000404721 284 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 AL590002.1-201ENST00000406554 418 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 UQCRBP1-201ENST00000421129 336 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 RPS12P10-201ENST00000427031 377 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SF3A1Q15459 USP12PX-201ENST00000432383 1057 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 RPS6P12-201ENST00000432491 726 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 VDAC1P3-201ENST00000434069 851 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 AL138799.3-201ENST00000438968 350 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC5.19□□□□□ -1.58
SF3A1Q15459 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.19□□□□□ -1.58
SF3A1Q15459 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC5.19□□□□□ -1.58
SF3A1Q15459 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SF3A1Q15459 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SF3A1Q15459 MTND2P24-201ENST00000453434 806 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 RN7SL738P-201ENST00000470264 297 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.19□□□□□ -1.58
SF3A1Q15459 OR5D17P-201ENST00000531492 978 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SF3A1Q15459 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC5.19□□□□□ -1.58
SF3A1Q15459 AP001094.1-201ENST00000579805 193 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC5.19□□□□□ -1.58
SF3A1Q15459 AC067959.1-201ENST00000604334 379 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 AC010133.1-201ENST00000615809 842 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 AC110801.1-201ENST00000623590 212 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 AC009161.2-201ENST00000624626 138 ntBASIC5.19□□□□□ -1.58
SF3A1Q15459 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.19□□□□□ -1.58
SF3A1Q15459 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SF3A1Q15459 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SF3A1Q15459 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.18□□□□□ -1.58
SF3A1Q15459 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.18□□□□□ -1.58
SF3A1Q15459 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 ELF2P3-201ENST00000445099 1506 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC5.18□□□□□ -1.58
SF3A1Q15459 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
SF3A1Q15459 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SF3A1Q15459 OR4K15-201ENST00000305051 1216 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 RNU4-12P-201ENST00000365233 139 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
SF3A1Q15459 RNU1-44P-201ENST00000384453 163 ntBASIC5.18□□□□□ -1.58
SF3A1Q15459 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SF3A1Q15459 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms