Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RPL21P47-201ENST00000483696 477 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXF1Q12946 RNU6-488P-201ENST00000515918 99 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC087276.1-201ENST00000529659 480 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
FOXF1Q12946 HSPE1P20-201ENST00000538133 289 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC095057.3-201ENST00000567102 1157 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC061975.8-201ENST00000587058 721 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC113368.1-201ENST00000603736 382 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 AL137847.3-201ENST00000611521 109 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC006213.5-201ENST00000619673 288 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXF1Q12946 AC243829.7-201ENST00000633081 225 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
FOXF1Q12946 ZNF734P-201ENST00000419494 1534 ntBASIC2.2□□□□□ -2.06
FOXF1Q12946 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXF1Q12946 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
FOXF1Q12946 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXF1Q12946 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
FOXF1Q12946 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC2.19□□□□□ -2.06
FOXF1Q12946 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
FOXF1Q12946 Y_RNA.111-201ENST00000363248 100 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 UBE2V1P2-201ENST00000397758 440 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 SSXP10-201ENST00000402595 565 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXF1Q12946 RAP1BP1-201ENST00000412709 553 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 HNRNPDLP1-201ENST00000412834 550 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 USP9YP36-201ENST00000424581 829 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
FOXF1Q12946 MTCO1P39-201ENST00000426148 480 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 YWHAZP8-201ENST00000436935 731 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 BTBD7P2-201ENST00000441962 620 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXF1Q12946 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
FOXF1Q12946 RPL36AP51-201ENST00000487216 318 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXF1Q12946 AC010468.3-201ENST00000508225 458 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC234781.5-201ENST00000508429 271 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC104108.1-201ENST00000509930 412 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXF1Q12946 SNORA31.15-201ENST00000516771 132 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 RNA5SP402-201ENST00000517148 110 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC027309.2-201ENST00000520566 192 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXF1Q12946 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXF1Q12946 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXF1Q12946 OR5BN1P-201ENST00000532955 829 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXF1Q12946 AADACP1-206ENST00000561502 1193 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXF1Q12946 ZNF92P2-201ENST00000600543 1059 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AL355812.1-201ENST00000603215 216 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AL671309.1-201ENST00000603750 544 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC096586.1-201ENST00000610267 561 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXF1Q12946 AL163051.2-201ENST00000618976 735 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC073569.3-201ENST00000619055 682 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AC091046.2-201ENST00000620775 665 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 AL109659.3-201ENST00000624985 950 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXF1Q12946 AC068620.4-201ENST00000636730 1182 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXF1Q12946 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXF1Q12946 AC007336.1-201ENST00000576365 3828 ntBASIC2.19□□□□□ -2.06
FOXF1Q12946 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXF1Q12946 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXF1Q12946 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
FOXF1Q12946 AC016716.1-201ENST00000265882 708 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
FOXF1Q12946 RNU6-792P-201ENST00000363490 107 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 RNVU1-3-201ENST00000364313 161 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXF1Q12946 RNU1-109P-201ENST00000383960 147 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 RNU6-629P-201ENST00000384061 103 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 SNORA41-201ENST00000384675 132 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
FOXF1Q12946 ATF1P1-201ENST00000406040 927 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXF1Q12946 AC009963.1-201ENST00000417265 157 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 AL606495.1-201ENST00000422100 813 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 NANOGP5-201ENST00000424456 877 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 PTP4A1P3-201ENST00000433661 420 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXF1Q12946 AC004865.1-201ENST00000442276 1003 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXF1Q12946 AL513328.1-201ENST00000446460 224 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
FOXF1Q12946 MTND2P30-201ENST00000456663 382 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 AC010285.1-201ENST00000470580 392 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 LINC00888-204ENST00000487386 421 ntBASIC2.18□□□□□ -2.06
FOXF1Q12946 RPL21P131-201ENST00000497298 483 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms