Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC073869.10-201ENST00000642016 354 ntBASIC5.41□□□□□ -1.54
MSX1P28360 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.41□□□□□ -1.54
MSX1P28360 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
MSX1P28360 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
MSX1P28360 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC5.41□□□□□ -1.54
MSX1P28360 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSX1P28360 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.41□□□□□ -1.54
MSX1P28360 AP005432.1-201ENST00000580891 3485 ntBASIC5.4□□□□□ -1.54
MSX1P28360 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC5.4□□□□□ -1.54
MSX1P28360 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX1P28360 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.4□□□□□ -1.54
MSX1P28360 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
MSX1P28360 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
MSX1P28360 AL034546.1-201ENST00000623740 3693 ntBASIC5.4□□□□□ -1.54
MSX1P28360 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.4□□□□□ -1.54
MSX1P28360 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX1P28360 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
MSX1P28360 HSPA8P1-201ENST00000425843 1833 ntBASIC5.4□□□□□ -1.54
MSX1P28360 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSX1P28360 Y_RNA.83-201ENST00000363005 113 ntBASIC5.4□□□□□ -1.54
MSX1P28360 RNU6-339P-201ENST00000384310 107 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AL109941.1-201ENST00000401925 229 ntBASIC5.4□□□□□ -1.54
MSX1P28360 RPS3AP2-201ENST00000407190 754 ntBASIC5.4□□□□□ -1.54
MSX1P28360 Y_RNA.592-201ENST00000410274 109 ntBASIC5.4□□□□□ -1.54
MSX1P28360 RNU6-1140P-201ENST00000410517 106 ntBASIC5.4□□□□□ -1.54
MSX1P28360 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC5.4□□□□□ -1.54
MSX1P28360 RPS15AP40-201ENST00000419621 391 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AC006946.1-201ENST00000429106 328 ntBASIC5.4□□□□□ -1.54
MSX1P28360 FTLP19-201ENST00000433300 394 ntBASIC5.4□□□□□ -1.54
MSX1P28360 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
MSX1P28360 AL663074.2-201ENST00000440621 479 ntBASIC5.4□□□□□ -1.54
MSX1P28360 RNU6-953P-201ENST00000459154 107 ntBASIC5.4□□□□□ -1.54
MSX1P28360 RNU1-88P-201ENST00000459274 128 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AC090602.1-201ENST00000469695 252 ntBASIC5.4□□□□□ -1.54
MSX1P28360 RN7SL629P-201ENST00000489622 285 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AC113155.1-201ENST00000511141 769 ntBASIC5.4□□□□□ -1.54
MSX1P28360 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.4□□□□□ -1.54
MSX1P28360 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.4□□□□□ -1.54
MSX1P28360 AP000648.1-201ENST00000529682 397 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AMZ2P1-203ENST00000565833 850 ntBASIC5.4□□□□□ -1.54
MSX1P28360 MIR5701-3-201ENST00000578890 82 ntBASIC5.4□□□□□ -1.54
MSX1P28360 MIR4776-2-201ENST00000580204 80 ntBASIC5.4□□□□□ -1.54
MSX1P28360 MIR3176-201ENST00000582210 90 ntBASIC5.4□□□□□ -1.54
MSX1P28360 MIR5701-1-201ENST00000585138 82 ntBASIC5.4□□□□□ -1.54
MSX1P28360 COX6CP7-201ENST00000597056 208 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AL158827.2-201ENST00000602494 330 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX1P28360 AC008962.1-201ENST00000605729 304 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX1P28360 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC5.4□□□□□ -1.54
MSX1P28360 MIR5701-2-201ENST00000615634 82 ntBASIC5.4□□□□□ -1.54
MSX1P28360 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AL731566.2-201ENST00000618971 317 ntBASIC5.4□□□□□ -1.54
MSX1P28360 AL691447.3-201ENST00000635020 330 ntBASIC5.4□□□□□ -1.54
MSX1P28360 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSX1P28360 AC010329.2-201ENST00000595195 2737 ntBASIC5.4□□□□□ -1.55
MSX1P28360 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
MSX1P28360 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSX1P28360 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSX1P28360 AL121839.2-201ENST00000565058 6943 ntBASIC5.39□□□□□ -1.55
MSX1P28360 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.39□□□□□ -1.55
MSX1P28360 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
MSX1P28360 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 OR13C1P-202ENST00000641378 2919 ntBASIC5.39□□□□□ -1.55
MSX1P28360 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
MSX1P28360 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 AC005183.1-201ENST00000603687 1979 ntBASIC5.39□□□□□ -1.55
MSX1P28360 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSX1P28360 RNU1-150P-201ENST00000362491 162 ntBASIC5.39□□□□□ -1.55
MSX1P28360 snoU2_19.2-201ENST00000363024 80 ntBASIC5.39□□□□□ -1.55
MSX1P28360 SNORD81.1-201ENST00000363064 77 ntBASIC5.39□□□□□ -1.55
MSX1P28360 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
MSX1P28360 GNG5P2-201ENST00000372054 207 ntBASIC5.39□□□□□ -1.55
MSX1P28360 RNU6-933P-201ENST00000384424 107 ntBASIC5.39□□□□□ -1.55
MSX1P28360 ENSAP1-201ENST00000392855 326 ntBASIC5.39□□□□□ -1.55
MSX1P28360 AL591034.2-201ENST00000402839 359 ntBASIC5.39□□□□□ -1.55
MSX1P28360 MRPL35P1-201ENST00000404272 572 ntBASIC5.39□□□□□ -1.55
MSX1P28360 U3.42-201ENST00000408746 214 ntBASIC5.39□□□□□ -1.55
MSX1P28360 AC099677.1-201ENST00000420575 175 ntBASIC5.39□□□□□ -1.55
MSX1P28360 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.39□□□□□ -1.55
MSX1P28360 RPL12P18-201ENST00000437175 325 ntBASIC5.39□□□□□ -1.55
MSX1P28360 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.39□□□□□ -1.55
MSX1P28360 AC064862.4-201ENST00000442180 334 ntBASIC5.39□□□□□ -1.55
MSX1P28360 RPL36AP39-201ENST00000445859 318 ntBASIC5.39□□□□□ -1.55
MSX1P28360 RNU7-120P-201ENST00000459334 63 ntBASIC5.39□□□□□ -1.55
MSX1P28360 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.39□□□□□ -1.55
MSX1P28360 RPS23P5-201ENST00000495419 428 ntBASIC5.39□□□□□ -1.55
MSX1P28360 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 130.7 ms