Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.93□□□□□ -2.1
HMGA1P17096 EI24P1-201ENST00000416584 867 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 AL096701.2-201ENST00000416920 238 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 RPL31P45-201ENST00000419532 356 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
HMGA1P17096 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.93□□□□□ -2.1
HMGA1P17096 AL031659.1-201ENST00000447075 539 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.93□□□□□ -2.1
HMGA1P17096 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 RN7SKP219-201ENST00000516825 296 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 snoZ278.1-201ENST00000517059 112 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.93□□□□□ -2.1
HMGA1P17096 AC068790.3-201ENST00000602988 553 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 AL049779.4-201ENST00000604500 156 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 VN1R74P-201ENST00000613259 503 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 DUXAP9-208ENST00000622815 614 ntBASIC1.93□□□□□ -2.1
HMGA1P17096 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.93□□□□□ -2.1
HMGA1P17096 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
HMGA1P17096 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
HMGA1P17096 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC1.93□□□□□ -2.1
HMGA1P17096 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HMGA1P17096 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.92□□□□□ -2.1
HMGA1P17096 HSPE1P1-201ENST00000421494 318 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 AC009961.3-201ENST00000449832 765 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 RPS20P22-201ENST00000473700 357 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 AC104564.1-201ENST00000493028 407 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 CKS1BP2-201ENST00000497342 240 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 GTF2IP9-201ENST00000502460 301 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 AC011352.3-201ENST00000505162 593 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.92□□□□□ -2.1
HMGA1P17096 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.92□□□□□ -2.1
HMGA1P17096 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.92□□□□□ -2.1
HMGA1P17096 RPP40P2-201ENST00000603596 712 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 AC010678.1-201ENST00000614118 713 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 AC084768.2-201ENST00000622736 221 ntBASIC1.92□□□□□ -2.1
HMGA1P17096 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HMGA1P17096 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
HMGA1P17096 RNA5SP338-201ENST00000410495 85 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 RNA5SP492-201ENST00000411330 114 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 SPA17P1-201ENST00000416656 452 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 RFESDP1-201ENST00000422350 461 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 AL358453.1-201ENST00000422522 250 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC1.91□□□□□ -2.1
HMGA1P17096 MTCYBP14-201ENST00000457471 715 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 AC079804.2-201ENST00000490376 200 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.91□□□□□ -2.1
HMGA1P17096 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.91□□□□□ -2.1
HMGA1P17096 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.91□□□□□ -2.1
HMGA1P17096 AF279873.1-201ENST00000523393 313 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.91□□□□□ -2.1
HMGA1P17096 AADACP1-206ENST00000561502 1193 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 MIR3683-201ENST00000580847 82 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
HMGA1P17096 AC113368.1-201ENST00000603736 382 ntBASIC1.91□□□□□ -2.1
HMGA1P17096 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.91□□□□□ -2.1
HMGA1P17096 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC1.91□□□□□ -2.1
HMGA1P17096 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.9□□□□□ -2.1
HMGA1P17096 MTND4P34-201ENST00000572715 1371 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 HSPE1P11-201ENST00000339579 310 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
HMGA1P17096 RNU1-109P-201ENST00000383960 147 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.9□□□□□ -2.11
HMGA1P17096 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC1.9□□□□□ -2.11
HMGA1P17096 HMGB1P12-201ENST00000438594 598 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC1.9□□□□□ -2.11
HMGA1P17096 HMGN2P21-201ENST00000447764 270 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
HMGA1P17096 AC090096.1-201ENST00000489168 390 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 AC023424.2-201ENST00000493479 777 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 RNU6-250P-201ENST00000516958 103 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 AC019227.1-201ENST00000526902 510 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 HSPE1P20-201ENST00000538133 289 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 AC090695.1-201ENST00000561269 1222 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 AL356280.1-201ENST00000603614 379 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 AC091564.4-201ENST00000533934 2194 ntBASIC1.9□□□□□ -2.11
HMGA1P17096 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC1.89□□□□□ -2.11
HMGA1P17096 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.89□□□□□ -2.11
HMGA1P17096 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.89□□□□□ -2.11
HMGA1P17096 AC009965.2-201ENST00000425328 970 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 WARS2P1-201ENST00000429678 537 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 OR4K11P-201ENST00000431829 904 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.89□□□□□ -2.11
HMGA1P17096 AL590664.1-201ENST00000448065 339 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 OR51B8P-201ENST00000449892 769 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.89□□□□□ -2.11
HMGA1P17096 RNU6-347P-201ENST00000516658 105 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC1.89□□□□□ -2.11
HMGA1P17096 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC1.89□□□□□ -2.11
HMGA1P17096 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.89□□□□□ -2.11
HMGA1P17096 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC1.89□□□□□ -2.11
HMGA1P17096 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC1.89□□□□□ -2.11
HMGA1P17096 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC1.89□□□□□ -2.11
HMGA1P17096 AP001029.3-201ENST00000588063 596 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.89□□□□□ -2.11
HMGA1P17096 HMGN2P28-201ENST00000606102 262 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 AC004241.3-201ENST00000611728 517 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 AC091834.1-201ENST00000614543 472 ntBASIC1.89□□□□□ -2.11
HMGA1P17096 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.89□□□□□ -2.11
HMGA1P17096 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms