Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 RPL7P47-201ENST00000497299 556 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC078918.1-201ENST00000498515 228 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 HSPE1P23-201ENST00000509838 286 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC093677.1-201ENST00000514414 678 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 RN7SKP83-201ENST00000516512 178 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC023161.2-201ENST00000551218 780 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 KLKP1-201ENST00000595979 403 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC020914.4-201ENST00000597690 277 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC006077.1-201ENST00000604746 343 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC004223.4-201ENST00000612426 332 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 MAPK10-253ENST00000641010 4072 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC244517.1-201ENST00000606030 2086 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RNU6-500P-201ENST00000362349 107 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RNU4-35P-201ENST00000362588 141 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RNA5SP322-201ENST00000363617 119 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 SNORD116-8-201ENST00000384365 95 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL031679.1-201ENST00000400616 525 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL583834.1-201ENST00000406943 343 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RN7SKP266-201ENST00000410232 287 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RNU2-15P-201ENST00000410692 191 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RNA5SP120-201ENST00000410900 112 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC019178.2-201ENST00000423595 505 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 NDUFB1P1-201ENST00000435191 180 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC005019.1-201ENST00000436455 431 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 UBE2D3P1-201ENST00000436669 444 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 MTND5P14-201ENST00000441481 1267 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL133217.1-201ENST00000450980 425 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RPL30P6-201ENST00000475925 342 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AHI1-208ENST00000488690 712 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC093809.1-201ENST00000509155 340 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 RN7SKP57-201ENST00000517248 293 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC087276.1-201ENST00000529659 480 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL139174.1-201ENST00000531489 886 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 EMP1-206ENST00000537612 505 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 SETP7-201ENST00000552169 453 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 MTND3P12-201ENST00000559068 328 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AF131215.7-201ENST00000602443 707 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC007687.1-201ENST00000602704 304 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC010738.1-201ENST00000604970 987 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 HMGB1P50-201ENST00000605814 607 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 U4.6-201ENST00000621618 127 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AP003355.3-201ENST00000623465 114 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AC091925.2-201ENST00000625059 256 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL732372.2-225ENST00000642124 456 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 GABPAP-201ENST00000419271 1356 ntBASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CCDC3Q9BQI4 AL157700.1-201ENST00000561973 1432 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RPL21P132-201ENST00000331267 462 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 Y_RNA.18-201ENST00000362461 102 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RNA5SP88-201ENST00000365560 109 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RPS15AP38-201ENST00000413110 372 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC3.44□□□□□ -1.86
CCDC3Q9BQI4 OR1AA1P-201ENST00000419597 916 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms