Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 COX6CP12-201ENST00000446748 202 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 MTND5P13-201ENST00000513046 1079 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 RNU6-714P-201ENST00000516963 103 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC091489.2-201ENST00000566263 604 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC034268.2-201ENST00000571784 482 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 MIR4307-201ENST00000582802 84 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC053481.4-201ENST00000583164 216 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 MIR548AB-201ENST00000584917 84 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC239868.4-201ENST00000608318 671 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-1Q99801 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-1Q99801 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 AC007656.2-201ENST00000624902 4547 ntBASIC3.25□□□□□ -1.89
NKX3-1Q99801 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-1Q99801 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NKX3-1Q99801 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NKX3-1Q99801 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NKX3-1Q99801 SNORA31-201ENST00000362607 130 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 RNU5F-6P-201ENST00000362979 116 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 RNU6-853P-201ENST00000364306 107 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 RNU6-283P-201ENST00000364788 107 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 SNORA62.3-201ENST00000365110 153 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 RNU6-1207P-201ENST00000384343 107 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 SNORA11-201ENST00000408789 128 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 RNU6-712P-201ENST00000410558 100 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 RNU2-37P-201ENST00000410695 177 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 MTCO1P17-201ENST00000411522 491 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 RPL30P2-201ENST00000414021 291 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC009237.5-201ENST00000414271 501 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AL159169.1-201ENST00000421119 127 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC244035.1-201ENST00000430042 390 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 MTCO2P16-201ENST00000436962 677 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 CEACAMP4-201ENST00000457676 421 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 snoU109.4-201ENST00000458953 143 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 RPL21P11-201ENST00000461458 483 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC104563.1-201ENST00000476147 376 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 RPL7P47-201ENST00000497299 556 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC005921.1-201ENST00000510589 286 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 FTH1P21-201ENST00000512179 511 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AF131216.2-201ENST00000512316 564 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 OR4R3P-201ENST00000525084 838 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NKX3-1Q99801 MED28P5-201ENST00000528254 438 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AP004242.1-201ENST00000533701 349 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 SETP7-201ENST00000552169 453 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 PCMTD1P2-201ENST00000565017 355 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 ACTR3BP3-201ENST00000565577 979 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC090615.1-201ENST00000577519 154 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC135507.1-201ENST00000607214 561 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC027807.2-201ENST00000616099 408 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 AC009090.3-201ENST00000616553 565 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NKX3-1Q99801 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AL049780.3-201ENST00000624612 1583 ntBASIC3.24□□□□□ -1.89
NKX3-1Q99801 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.24□□□□□ -1.89
NKX3-1Q99801 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms