Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 RPL23AP71-201ENST00000470966 469 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 TRBV5-2-201ENST00000489095 273 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 UBA52P3-201ENST00000491303 382 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC108078.2-201ENST00000510750 236 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 TOMM22P4-201ENST00000511318 336 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC109479.2-201ENST00000517842 174 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 MIR4273-201ENST00000582824 84 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC009570.1-201ENST00000609599 745 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AC110774.1-201ENST00000623567 2018 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 MTND1P7-201ENST00000632801 297 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 RLIMP1-201ENST00000339626 1680 ntBASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
NPAS3Q8IXF0 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC003973.3-201ENST00000624863 2822 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC138393.1-203ENST00000327086 343 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 RNU1-106P-201ENST00000384382 164 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 RNU6-393P-201ENST00000384475 107 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 MIR550A3-201ENST00000390735 95 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 PRUNEP1-201ENST00000425846 705 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AL590762.4-201ENST00000425885 253 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 RPL23AP15-201ENST00000450202 459 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 RPS18P6-201ENST00000476880 458 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC087190.1-201ENST00000484462 480 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC107032.1-201ENST00000485945 480 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC010469.2-201ENST00000496412 480 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC008958.1-201ENST00000511047 682 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 RNU6-1219P-201ENST00000516143 112 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 RNU6-1333P-201ENST00000516162 93 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 FAM60DP-201ENST00000524174 632 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC006115.2-201ENST00000596823 202 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AL049794.2-201ENST00000616301 365 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AL136313.1-201ENST00000624804 202 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC009902.3-201ENST00000606235 2172 ntBASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.77□□□□□ -1.49
NPAS3Q8IXF0 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 Z75746.1-201ENST00000440243 2080 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 AP000560.1-201ENST00000624150 1937 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 Y_RNA.143-201ENST00000363520 106 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 RNU1-85P-201ENST00000364127 164 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 SNORA69.1-201ENST00000390904 137 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 RNU6-918P-201ENST00000391219 106 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 AL645733.1-201ENST00000402250 217 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 RPS4XP7-201ENST00000406274 780 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 RN7SKP216-201ENST00000411050 312 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 AL645568.3-201ENST00000433683 316 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 UBE2V1P13-201ENST00000436983 439 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 PSMD10P3-201ENST00000437000 448 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 RAC1P7-201ENST00000445367 377 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 MTND6P5-201ENST00000448266 512 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 AC239809.1-201ENST00000450470 217 ntBASIC5.76□□□□□ -1.49
NPAS3Q8IXF0 RNU7-27P-201ENST00000459281 62 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms